View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_36 (Length: 365)
Name: NF5918_low_36
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 32955879 - 32955547
Alignment:
| Q |
11 |
catcatcatatcctcatcctctactttgatgttagtgaaaatgtattgtaaatcattaaaataaaaagaaagttggtgtaatttgcatatattagaacag |
110 |
Q |
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| T |
32955879 |
catcatcatatcctcatcctctactttgatgttagtgaaaatgtattgtaaatcattaaaataaaaagaaagttggtgtaatttgcatatattagaacag |
32955780 |
T |
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| Q |
111 |
tgtaagttatctacccagttaacactactgtcttcttccgacgtttcactttctacaactttgaaatcacggtggtaatgtgattttgttaaacctctaa |
210 |
Q |
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| T |
32955779 |
tgtaagttatctacccagttaacactactgtcttcttccgacgcttcactttctacaactttgaaatcacggtggtaatgtgattttgttaaagctctaa |
32955680 |
T |
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| Q |
211 |
tttgtagtttttgccataatcacagtgacattttgtgatttcggcaaactcattgttagttccaacatacaattaatcaaattctgcaatttggagtttt |
310 |
Q |
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| T |
32955679 |
tgtgtagtttttgccataatcacagtgacattttgtgatttcgtcaaactcattgttagttccaacatacaattaatcaaattctgcaatttggagtttt |
32955580 |
T |
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| Q |
311 |
ttatggaaattttgttaacttttttgacaacta |
343 |
Q |
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|||||||||||||||||||||||||||| |||| |
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| T |
32955579 |
ttatggaaattttgttaacttttttgacgacta |
32955547 |
T |
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