View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_38 (Length: 339)
Name: NF5918_low_38
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_38 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 15 - 339
Target Start/End: Original strand, 152957 - 153281
Alignment:
| Q |
15 |
gggggcaaattctctaactatcacgttttctaacaaaaaatgggagggttttgtaaattaaaaatagtgtaacaatggaagatgttttattttgtgcata |
114 |
Q |
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| T |
152957 |
gggggcaaattctctaactatcacgttttataacaaaaaatgggagggttttgtaaattaaaaatagtgtaacaatggaagatgttttattttgtgcata |
153056 |
T |
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| Q |
115 |
gcttcatggcttacagctttcaaagtgttttttgaattgcgattgtcggttttgatacgacttttgcagagttgtgctaatattttaataaacgtttgtt |
214 |
Q |
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| T |
153057 |
gcttcatggcttacagctttcaaagtgtttattgaattgcgattgtcggttttgatacgacttttgcagaattgtgttaatattttaataaacttttgtt |
153156 |
T |
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| Q |
215 |
gtgtttgtgttgaatataagtataattgagatatgtgttaattttggtggcatgtactatgcaggttaattgagaatgatctattgaaacaggactggag |
314 |
Q |
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| T |
153157 |
gtgtttgtgttgaatataagtataattgagatatatgttaattttggtggcatgtactatgcaggttaattgagaatgatctattgaaacaggactggag |
153256 |
T |
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| Q |
315 |
gtcaagaacaaaggttgagatatac |
339 |
Q |
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| T |
153257 |
gtcaagaacaaaggttgagatatac |
153281 |
T |
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