View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5918_low_40 (Length: 330)

Name: NF5918_low_40
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5918_low_40
NF5918_low_40
[»] chr1 (11 HSPs)
chr1 (114-313)||(36675280-36675479)
chr1 (114-288)||(36669635-36669818)
chr1 (1-80)||(6808489-6808565)
chr1 (3-76)||(9109479-9109549)
chr1 (1-76)||(16914234-16914307)
chr1 (12-80)||(22079364-22079429)
chr1 (9-80)||(3156910-3156977)
chr1 (9-80)||(28220282-28220349)
chr1 (9-80)||(28223477-28223544)
chr1 (9-80)||(49918395-49918462)
chr1 (1-75)||(4535541-4535612)
[»] chr4 (13 HSPs)
chr4 (1-84)||(33089915-33089995)
chr4 (1-84)||(22882802-22882882)
chr4 (1-84)||(22934466-22934546)
chr4 (1-80)||(6677506-6677582)
chr4 (9-80)||(12119584-12119652)
chr4 (9-80)||(56178693-56178760)
chr4 (4-74)||(44570427-44570494)
chr4 (12-80)||(4588007-4588071)
chr4 (12-80)||(40632493-40632557)
chr4 (1-80)||(8665445-8665520)
chr4 (9-80)||(9927514-9927581)
chr4 (9-80)||(37740670-37740737)
chr4 (9-84)||(54199958-54200029)
[»] chr8 (5 HSPs)
chr8 (1-80)||(7597651-7597727)
chr8 (14-76)||(32902233-32902292)
chr8 (3-60)||(11137064-11137118)
chr8 (12-84)||(18655448-18655516)
chr8 (9-80)||(42498239-42498306)
[»] chr2 (6 HSPs)
chr2 (1-77)||(30218103-30218176)
chr2 (12-80)||(24398105-24398170)
chr2 (12-80)||(45726977-45727041)
chr2 (13-76)||(4561137-4561197)
chr2 (9-80)||(5723312-5723379)
chr2 (1-76)||(42261545-42261617)
[»] chr5 (9 HSPs)
chr5 (1-79)||(316799-316874)
chr5 (12-84)||(13695742-13695811)
chr5 (1-84)||(22097901-22097979)
chr5 (1-84)||(3325950-3326030)
chr5 (13-76)||(10054876-10054935)
chr5 (9-84)||(39468601-39468672)
chr5 (9-80)||(13239796-13239863)
chr5 (9-80)||(13488248-13488315)
chr5 (9-80)||(42428486-42428553)
[»] scaffold0053 (1 HSPs)
scaffold0053 (13-76)||(25102-25162)
[»] chr6 (1 HSPs)
chr6 (36-84)||(25073637-25073685)
[»] chr3 (10 HSPs)
chr3 (12-73)||(2020187-2020245)
chr3 (12-80)||(30236173-30236237)
chr3 (1-84)||(33191869-33191947)
chr3 (12-80)||(46173405-46173469)
chr3 (9-80)||(7762310-7762377)
chr3 (1-76)||(8166516-8166588)
chr3 (1-76)||(25491027-25491099)
chr3 (9-80)||(29810913-29810980)
chr3 (46-79)||(35138762-35138795)
chr3 (36-80)||(55302028-55302071)
[»] chr7 (4 HSPs)
chr7 (13-77)||(36574574-36574635)
chr7 (9-80)||(27347862-27347929)
chr7 (9-80)||(47673999-47674066)
chr7 (9-80)||(48491624-48491691)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-76)||(490380-490452)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 114 - 313
Target Start/End: Complemental strand, 36675479 - 36675280
Alignment:
Q  114 aagatatgtgcctagctattgtaatgtttatttatcttctattactctataaattatgggctccttgaaggaattttttggtttattccttcttatgttc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36675479 aagatatgtgcctagctattgtaatgtttatttatcttctattactctataaattatgggctccttgaaggaattttttggtttattccttcttatgttc 36675380  T
Q  214 ttataactagatcctattgatctctatctctcttttgtttggggttgatgtggagaaagttatgctatattgtgcttgagacaaaactaatatagttctt 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36675379 ttataactagatcctattgatctctatctctcttttgtttggggttgatgtggagaaagttatgctatattgtgcttgagacaaacctaatatagttctt 36675280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 36669818 - 36669635
Alignment:
Q  114 aagatatgtgcctagctattgtaatgtttatttatcttctattactctataaattatgggctccttgaaggaattttttggtttattccttcttatgtt- 212  Q
    |||| |||||||||||||||| | |||||||| || || ||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||     
T  36669818 aagagatgtgcctagctattgcattgtttattcatattttattattctataaatcatgggctccttaaaggaattttttggtttattccttcttatgtta 36669719  T
Q  213 --------cttataactagatcctattgatctctatctctcttttgtttggggttgatgtggagaaagttatgctatattgtgc 288  Q
            |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  36669718 tttacgttcttataactagatccttttgatctctatctctcttttgcttggggttgatgtggagaaagttatgctgtattgtgc 36669635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6808489 - 6808565
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||| |||||||||||||| ||||   | ||||  ||| |||||||||||||||||| ||||| ||||||||||    
T  6808489 ttcttggagagcttgttgaagctaacttct---tgtaactcttttgtatctctttgtaaagaactcatttatagtggatt 6808565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 9109549 - 9109479
Alignment:
Q  3 cttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    ||||||||||||||||||| |||||||   || ||||| ||| ||||||||||||||||||  | |||||||||    
T  9109549 cttggagaacttgttgaagttaatttc---ttgtaacccttttgtatctctttgtaaagaacacgttgatagtg 9109479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 16914307 - 16914234
Alignment:
Q  1 ttcttggagaacttgttgaagctaa-tttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    |||||||||| | |||||||||||| |||||   | ||||| ||| |||||||||||||||||| ||||||||||||    
T  16914307 ttcttggagagcctgttgaagctaagtttct---tctaacccttttgtatctctttgtaaagaactcattgatagtg 16914234  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 22079364 - 22079429
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||| ||||||||||||   | ||||| ||| |||||||||||||||||| ||||||||| ||||||    
T  22079364 cttgttaaagctaatttct---tgtaaccattttgtatctctttgtaaagaactcattgatattggatt 22079429  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 3156910 - 3156977
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  3156910 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 3156977  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 28220349 - 28220282
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  28220349 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 28220282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 28223544 - 28223477
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  28223544 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 28223477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 49918395 - 49918462
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  49918395 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 49918462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4535612 - 4535541
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagt 75  Q
    |||||||||| ||| ||||||  |||||||   | |||| |||| |||||||||||||||||| |||||||||||    
T  4535612 ttcttggagagcttattgaagtcaatttct---tgtaacatttttgtatctctttgtaaagaactcattgatagt 4535541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33089915 - 33089995
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    |||||||||| |||||||||||||||||   ||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||    
T  33089915 ttcttggagagcttgttgaagctaattt---attataaccattttgtatctctctgtaaagaactcattgatagtggattagag 33089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22882882 - 22882802
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    ||||||||||  ||||||||||||||||||   | ||||| ||| ||||||||| |||||||| |||||| |||||||||||||    
T  22882882 ttcttggagagtttgttgaagctaatttct---tgtaacccttttgtatctcttcgtaaagaactcattggtagtggattagag 22882802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 22934546 - 22934466
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    ||||||||||  ||||||||||||||||||   | ||||| ||| ||||||||| |||||||| |||||| |||||||||||||    
T  22934546 ttcttggagagtttgttgaagctaatttct---tgtaacccttttgtatctcttcgtaaagaactcattggtagtggattagag 22934466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 6677506 - 6677582
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||| ||||||||||||||||||   || ||||| ||| |||| ||||||||||||| || |||||| ||||||    
T  6677506 ttcttggagagcttgttgaagctaatttc---ttgtaacccttttgtatatctttgtaaagaagtctttgataatggatt 6677582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 12119584 - 12119652
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||| |||||||||||||||   | ||||| ||| |||||||||||||||||| ||||| ||||||||||    
T  12119584 gaactttttgaagctaatttct---tgtaacccttttgtatctctttgtaaagaactcatttatagtggatt 12119652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 56178760 - 56178693
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || ||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  56178760 gaacttgttgaagctaatttc---ttgtaacccttttgtatctctttgt-aagaactcattgatagtggatt 56178693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 44570494 - 44570427
Alignment:
Q  4 ttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatag 74  Q
    ||||||| ||||||||| |||||||||   | |||| |||| |||||||||||||||||| ||||||||||    
T  44570494 ttggagagcttgttgaaactaatttct---tgtaacatttttgtatctctttgtaaagaactcattgatag 44570427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 4588007 - 4588071
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    ||||||||||||||||||   || ||||| ||| |||||||||||| ||||| ||||||||||||||||    
T  4588007 cttgttgaagctaatttc---ttgtaacccttttgtatctctttgt-aagaactcattgatagtggatt 4588071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 40632493 - 40632557
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    ||||||||||||||||||   || |||||| || |||||||||||| ||||| ||||||||||||||||    
T  40632493 cttgttgaagctaatttc---ttgtaacctatttgtatctctttgt-aagaactcattgatagtggatt 40632557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8665445 - 8665520
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    ||||| |||| ||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  8665445 ttctttgagagcttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 8665520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 9927581 - 9927514
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  9927581 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 9927514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 37740670 - 37740737
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  37740670 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 37740737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 54200029 - 54199958
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| |||||||||||| |||||||    
T  54200029 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtgaattagag 54199958  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 7597651 - 7597727
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||| |||||||||||||||||||   ||||| | ||| ||||||||||||||||||| |||||||||||||||    
T  7597651 ttcttggagagcttgttgaagctaatttct---tataatccttttgtatctctttgtaaagaatgcattgatagtggatt 7597727  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 32902292 - 32902233
Alignment:
Q  14 tgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    |||||||||||||||||   | |||| |||| |||||||||| ||||||||||||||||||||    
T  32902292 tgttgaagctaatttct---tgtaacttttttgtatctctttctaaagaattcattgatagtg 32902233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 11137064 - 11137118
Alignment:
Q  3 cttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaa 60  Q
    |||| ||||||||||||||||||||||   |||||||| ||| |||||||||||||||    
T  11137064 cttgaagaacttgttgaagctaatttc---ttataaccgttttgtatctctttgtaaa 11137118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 18655448 - 18655516
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    |||||||||||||||||||   | |||||  || |||||||||||||| ||| ||||||||||||||||||||    
T  18655448 cttgttgaagctaatttct---tgtaacccatttgtatctctttgtaa-gaactcattgatagtggattagag 18655516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 42498239 - 42498306
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || ||||| ||| |||| ||||||| ||||| ||||||||||||||||    
T  42498239 gaacttgttgaagctaatttc---ttgtaacccttttgtatttctttgt-aagaactcattgatagtggatt 42498306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30218176 - 30218103
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtgg 77  Q
    |||||||||| ||| |||||||||||||||   | ||||| ||| ||||||||||||||| ||||||||||||||||    
T  30218176 ttcttggagagcttattgaagctaatttct---tgtaaccattttgtatctctttgtaaataattcattgatagtgg 30218103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 24398105 - 24398170
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||   | ||||| ||| |||||||||||||||||| ||||||||| ||||||    
T  24398105 cttgttgaagctaatttct---tgtaacccttttgtatctctttgtaaagaactcattgataatggatt 24398170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 45726977 - 45727041
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    ||||||||||||||||||   || |||||| || |||||||||||| ||||| ||||||||||||||||    
T  45726977 cttgttgaagctaatttc---ttgtaacctatttgtatctctttgt-aagaactcattgatagtggatt 45727041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 4561137 - 4561197
Alignment:
Q  13 ttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    ||||||||||||||||||   | |||| |||| ||||||||||||||| ||||||||| |||||    
T  4561137 ttgttgaagctaatttct---tgtaacatttttgtatctctttgtaaaaaattcattgttagtg 4561197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 5723379 - 5723312
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    ||||||||  ||||||||||||   | ||||||||| |||||||||||| ||||| ||||||||||||||||    
T  5723379 gaacttgtcaaagctaatttct---tgtaacctttttgtatctctttgt-aagaactcattgatagtggatt 5723312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 42261617 - 42261545
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    |||||||||| ||||||||||||||||||   || ||||  ||| |||| ||||||||||| | ||||||||||||    
T  42261617 ttcttggagagcttgttgaagctaatttc---ttgtaactcttttgtatatctttgtaaagtactcattgatagtg 42261545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 316799 - 316874
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggat 79  Q
    |||||||||| ||||||||||||||||||   || ||| | ||| |||||||||||||||||| ||||||||| |||||    
T  316799 ttcttggagagcttgttgaagctaatttc---ttgtaatccttttgtatctctttgtaaagaactcattgataatggat 316874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 13695811 - 13695742
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    |||||| ||||||||||||   | ||||| ||| |||||||||||||||||| ||||| ||||||||||||||    
T  13695811 cttgttaaagctaatttct---tgtaacccttttgtatctctttgtaaagaactcattaatagtggattagag 13695742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 22097901 - 22097979
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    ||||||||||| ||||||||| ||||||||   ||||||| ||  |||||| |||||||| || ||||||||||||||||||||    
T  22097901 ttcttggagaatttgttgaagttaatttct---tataaccctt--gtatctatttgtaaaaaactcattgatagtggattagag 22097979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 3325950 - 3326030
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    |||||| ||| |||||||||||||||||||   | ||||| ||  |||||||||||||||||| ||| |||| |||||||||||    
T  3325950 ttcttgaagagcttgttgaagctaatttct---tgtaaccattgtgtatctctttgtaaagaactcaatgatggtggattagag 3326030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 10054935 - 10054876
Alignment:
Q  13 ttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    ||||||||||||||||||   ||||||||||| |||||||||||||| ||| ||||||||||||    
T  10054935 ttgttgaagctaatttct---tataacctttt-gtatctctttgtaatgaactcattgatagtg 10054876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 39468672 - 39468601
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    ||||||||||||||||||||||   | |||||  || |||||||||||||| ||| ||||||||||||||||||||    
T  39468672 gaacttgttgaagctaatttct---tgtaacccatttgtatctctttgtaa-gaactcattgatagtggattagag 39468601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 13239796 - 13239863
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || ||||  ||| |||||||||||| ||||| ||||||||||||||||    
T  13239796 gaacttgttgaagctaatttc---ttgtaactcttttgtatctctttgt-aagaactcattgatagtggatt 13239863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 13488248 - 13488315
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  13488248 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 13488315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 42428553 - 42428486
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  42428553 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 42428486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 25102 - 25162
Alignment:
Q  13 ttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    ||||||||| ||||||||   | ||||||||| |||||||||||||||||| ||||||||||||    
T  25102 ttgttgaaggtaatttct---tgtaacctttttgtatctctttgtaaagaactcattgatagtg 25162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 25073637 - 25073685
Alignment:
Q  36 taaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    ||||| ||| |||||||| ||||||||| ||||||||||||||||||||    
T  25073637 taacccttttgtatctctatgtaaagaactcattgatagtggattagag 25073685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 2020187 - 2020245
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgata 73  Q
    |||||||||||||||||||   ||||||| ||| |||| ||||||||||||| |||||||||    
T  2020187 cttgttgaagctaatttct---tataaccgttttgtatttctttgtaaagaactcattgata 2020245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 30236173 - 30236237
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    ||||||||||||||||||   || |||||| || |||||||||||| ||||| ||||||||||||||||    
T  30236173 cttgttgaagctaatttc---ttgtaacctatttgtatctctttgt-aagaactcattgatagtggatt 30236237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33191869 - 33191947
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggattagag 84  Q
    ||||| |||| |||||||||||||| ||||   | ||||| |||  ||| ||||||||||||| ||||||||||||||||||||    
T  33191869 ttcttagagagcttgttgaagctaagttct---tgtaaccattt--tatgtctttgtaaagaactcattgatagtggattagag 33191947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 46173405 - 46173469
Alignment:
Q  12 cttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||   | |||||  || |||||||||||||| ||||||||||||||||||||    
T  46173405 cttgttgaagctaatttct---tgtaacccatttgtatctctttgtaa-gaattcattgatagtggatt 46173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 7762310 - 7762377
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || ||||  ||| |||||||||||| ||||| ||||||||||||||||    
T  7762310 gaacttgttgaagctaatttc---ttgtaactcttttgtatctctttgt-aagaactcattgatagtggatt 7762377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8166588 - 8166516
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    ||||||||||  ||||||||| |||| |||   ||||||||||| |||||||||||||||||| |  |||||||||    
T  8166588 ttcttggagagtttgttgaagttaatatct---tataacctttttgtatctctttgtaaagaacttgttgatagtg 8166516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 25491099 - 25491027
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    ||||| |||| |||||||||||| ||||||   ||||  | ||| |||||||||||||||||| ||||||||||||    
T  25491099 ttctttgagagcttgttgaagctgatttct---tatactccttttgtatctctttgtaaagaaatcattgatagtg 25491027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 29810913 - 29810980
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  29810913 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 29810980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 79
Target Start/End: Complemental strand, 35138795 - 35138762
Alignment:
Q  46 gtatctctttgtaaagaattcattgatagtggat 79  Q
    |||||||||||||||||| |||||||||||||||    
T  35138795 gtatctctttgtaaagaactcattgatagtggat 35138762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 55302071 - 55302028
Alignment:
Q  36 taaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||| || |||||||||||||| ||||||||||||||||||||    
T  55302071 taacctatttgtatctctttgtaa-gaattcattgatagtggatt 55302028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 36574635 - 36574574
Alignment:
Q  13 ttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtgg 77  Q
    ||||||||||||||||||   | ||||| |||  ||||||||||||||||| |||||||||||||    
T  36574635 ttgttgaagctaatttct---tgtaacccttttatatctctttgtaaagaactcattgatagtgg 36574574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 27347862 - 27347929
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  27347862 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 27347929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 47674066 - 47673999
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || |||||||||||| ||||| ||||||||||||||||    
T  47674066 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttgt-aagaactcattgatagtggatt 47673999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 48491624 - 48491691
Alignment:
Q  9 gaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtggatt 80  Q
    |||||||||||||||||||||   || |||||  || ||||||||||| |||||| ||||||||||||||||    
T  48491624 gaacttgttgaagctaatttc---ttgtaacccatttgtatctctttg-aaagaactcattgatagtggatt 48491691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 490452 - 490380
Alignment:
Q  1 ttcttggagaacttgttgaagctaatttctaattataaccttttcgtatctctttgtaaagaattcattgatagtg 76  Q
    |||||||||| ||||||||||||||||||   || ||||  ||| |||| ||||||||||| | ||||||||||||    
T  490452 ttcttggagagcttgttgaagctaatttc---ttgtaactcttttgtatatctttgtaaagtactcattgatagtg 490380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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