View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_41 (Length: 329)
Name: NF5918_low_41
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_41 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 9364 - 9041
Alignment:
| Q |
5 |
atttatttatttttatcttaagtatcagagtgtaatttaacacatatattgatcgaatccgtaaaaatcagctactatattgatcaacttgtctgaatgg |
104 |
Q |
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| T |
9364 |
atttatttatttttatcttaagtat-agagtgtaatttaacacataaattgatcgaatccgtaaaaatcagctactatattgatcaacttgtctgaatgg |
9266 |
T |
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| Q |
105 |
acaagttggccatatattagatatatacaacattaagcaaaaatagctccagatgactaaatataatgttgagcatccaacaagataatatgtacagcgt |
204 |
Q |
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| T |
9265 |
acaagttggccatatattagttatatacaacattaagcaaaaatagctccagatgactaaatataatgttgagcattcaagaagataatatgtacagcgt |
9166 |
T |
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| Q |
205 |
gttggtggtaacttggaatttggcgtcatagacacaaatcttcttcaaaatagtctacttcaactttgaacatgccagcaaagctacgactctatgagca |
304 |
Q |
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| T |
9165 |
gttggtggtaacttggaatttggcgtcatagacacaaatcttcttcaaaatagtctacttcaactttgaacatgctagcaaagctatgactctatgagca |
9066 |
T |
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| Q |
305 |
acacagagtttgatatttctaaaat |
329 |
Q |
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| T |
9065 |
acacagagtttgatatttctaaaat |
9041 |
T |
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