View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5918_low_42 (Length: 316)
Name: NF5918_low_42
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 25 - 312
Target Start/End: Original strand, 5160578 - 5160866
Alignment:
| Q |
25 |
ttatttctcaataataacaactttagtggaacacttgtagatgtattgggaaataatacaggattagcaatgctatctatatccaataattcattctcag |
124 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||| | ||||| |||||||||||||||||||||| |
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| T |
5160578 |
ttatttcttaataataacaactttagtggaacacttgaagatgtattgggaaacaatacagaattagcatttctatccatatccaataattcattctcag |
5160677 |
T |
|
| Q |
125 |
gcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcagatccctattgagatttccaacat |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
5160678 |
gcacaattcctagttcaattgggacgttttctaacatggaagtccttatcatgtctgaaaatctattagaaggtgagatccctattgagttttccaacat |
5160777 |
T |
|
| Q |
225 |
gtcaaagcttgaaattattgatctttc-tcagaacaagttaattggatcaatcccagatttaagtagtttgacatatctaaggttcttg |
312 |
Q |
| |
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|| | |||||||| | |||||||| ||| |||||||||| ||||||||||||| ||||||||||||||| | ||||| ||||||| |
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| T |
5160778 |
gttcagtcttgaaatgttggatctttcttcaaaacaagttaaatggatcaatcccacctttaagtagtttgacttctctaaagttcttg |
5160866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 312
Target Start/End: Original strand, 5214383 - 5214670
Alignment:
| Q |
25 |
ttatttctcaataataacaactttagtggaacacttgtagatgtattgggaaataatacaggattagcaatgctatctatatccaataattcattctcag |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||| |
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| T |
5214383 |
ttatttctcaataataacaactttagtggaacacttgaagatgtattgggaaataatacaggattagtatttctatccatatccaataattcattctcag |
5214482 |
T |
|
| Q |
125 |
gcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcagatccctattgagatttccaacat |
224 |
Q |
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| ||||||||||| ||||||||||| |||||| |||| |||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
5214483 |
gaacaattcctagctcaattgggacattttcttacatctgggtccttcttatgtctcaaaatatattagaaggtgagatccctattgagatttccaacat |
5214582 |
T |
|
| Q |
225 |
gtcaaagcttgaaattattgatctttctcagaacaagttaattggatcaatcccagatttaagtagtttgacatatctaaggttcttg |
312 |
Q |
| |
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||||| ||| ||||| | ||||||||||| |||||||||||||||||||||||| | |||||| |||||||| ||| ||||||||| |
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|
| T |
5214583 |
gtcaagtcttaaaattctggatctttctcaaaacaagttaattggatcaatcccaaagttaagtggtttgacagttcttaggttcttg |
5214670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 5196213 - 5196513
Alignment:
| Q |
12 |
gaatatgtttgggttatttctcaataataacaactttagtggaacacttgtagatgtattgggaaataatacaggattagcaatgctatctatatccaat |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||| || ||| || ||||||||| |
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|
| T |
5196213 |
gaatatgtttgggttatttcttaataataacaactttagtggaacacttgaagatgtattaggaaataatacaagattagaaacgctgtccatatccaat |
5196312 |
T |
|
| Q |
112 |
aattcattctcaggcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcagatccctattg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| || |||||| |||||||||| |||||||||||| |
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|
| T |
5196313 |
aattcattctcaggcacaattcctagttcaattgggatgttttctaacatgtgggcccttcttatgtctaaaaatcaattagaaggtgagatccctattg |
5196412 |
T |
|
| Q |
212 |
agatttccaacatgtcaaagcttgaaattattgatctttctcagaacaagttaattggatcaatcccagatttaagtagtttgacatatctaaggttctt |
311 |
Q |
| |
|
||||||||| ||| | |||| ||||| | ||||||||||| |||||||||| ||||||||||||| ||||||| ||||||| |||||||||||| |
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|
| T |
5196413 |
agatttccagcatatggcggcttcaaattttagatctttctcaaaacaagttaaatggatcaatcccacctttaagtggtttgactcttctaaggttctt |
5196512 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
5196513 |
g |
5196513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 12 - 312
Target Start/End: Original strand, 5182807 - 5183107
Alignment:
| Q |
12 |
gaatatgtttgggttatttctcaataataacaactttagtggaacacttgtagatgtattgggaaataatacaggattagcaatgctatctatatccaat |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||| |||| ||| ||||||||| |
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|
| T |
5182807 |
gaatatgtttgggttatttcttaataataacaactttagtggaacacttgaagatgtattggaaaacaatacaggattaggaatgttattcatatccaat |
5182906 |
T |
|
| Q |
112 |
aattcattctcaggcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcagatccctattg |
211 |
Q |
| |
|
| ||| || |||||| |||||||||||||||||||| ||||||| | ||| |||||||||||||| | | |||||||||||||||| |||||||||||| |
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|
| T |
5182907 |
tactcaatcacaggcaaaattcctagttcaattgggatgttttctgatatgcaagtccttcttatgtccggaaatctattagaaggtgagatccctattg |
5183006 |
T |
|
| Q |
212 |
agatttccaacatgtcaaagcttgaaattattgatctttctcagaacaagttaattggatcaatcccagatttaagtagtttgacatatctaaggttctt |
311 |
Q |
| |
|
|||||||||||||| | | ||| |||| | ||||||||||| |||||||||| |||||| |||||| | || ||||||||||||| |||||||||||| |
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|
| T |
5183007 |
agatttccaacatggccattcttcaaatgttggatctttctcaaaacaagttaaatggatcgatcccaaagttcagtagtttgacatctctaaggttctt |
5183106 |
T |
|
| Q |
312 |
g |
312 |
Q |
| |
|
| |
|
|
| T |
5183107 |
g |
5183107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 23 - 312
Target Start/End: Complemental strand, 4856533 - 4856244
Alignment:
| Q |
23 |
ggttatttctcaataataacaactttagtggaacacttgtagatgtattgggaaataatacaggattagcaatgctatctatatccaataattcattctc |
122 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| ||||||||||| ||| || | |
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|
| T |
4856533 |
ggttattgctcagtaataacaactttagtggaacacttgaagatgtattgggaaataatacaagattaacaatgctatccatatccaataactcaatcac |
4856434 |
T |
|
| Q |
123 |
aggcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcagatccctattgagatttccaac |
222 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| |
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|
| T |
4856433 |
aggcaaaattcctagttcaattgggaagttttctaacatggtttcccttgttatgtctgaaaatcaattagaaggtgagatccctattgagatttccaac |
4856334 |
T |
|
| Q |
223 |
atgtcaaagcttgaaattattgatctttctcagaacaagttaattggatcaatcccagatttaagtagtttgacatatctaaggttcttg |
312 |
Q |
| |
|
||||| | ||| | ||| | ||||||||||| ||||||||| ||||| |||||||| | |||||| |||||||| ||| ||||||||| |
|
|
| T |
4856333 |
atgtccagtctttatattttggatctttctcaaaacaagttagttggagcaatcccaaagttaagtggtttgacagttcttaggttcttg |
4856244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 25 - 312
Target Start/End: Complemental strand, 4842040 - 4841747
Alignment:
| Q |
25 |
ttatttctcaataataacaactttagtggaacacttgtagatgtattgggaaa------taatacaggattagcaatgctatctatatccaataattcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||| | ||||||| ||||||||||| ||| |
|
|
| T |
4842040 |
ttatttctcaataataacaactttagtggaacacttgatgatgtattgggaaagggaaataatagaagattaatattgctatccatatccaataactcaa |
4841941 |
T |
|
| Q |
119 |
tctcaggcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcagatccctattgagatttc |
218 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||| ||||| | ||||| |||||| | |||||| |||||||||||||||||||||||||||||| |
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|
| T |
4841940 |
tcacaggcaaaattcctagttcaattgggatgttttctcacatgcagttcctttttatgggtcaaaatcaattagaaggtcagatccctattgagatttc |
4841841 |
T |
|
| Q |
219 |
caacatgtcaaagcttgaaattattgatctttctcagaacaagttaattggatcaatcccagatttaagtagtttgacatatctaaggttcttg |
312 |
Q |
| |
|
||||||| || |||| | ||| | ||||||||||| ||||||||||||||| |||||||| | || |||||||| | |||||||||||||||| |
|
|
| T |
4841840 |
caacatgccatggcttcatattttggatctttctcaaaacaagttaattggagcaatcccaaagttgagtagttttaaatatctaaggttcttg |
4841747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 279
Target Start/End: Original strand, 5173482 - 5173742
Alignment:
| Q |
25 |
ttatttctcaataataacaactttagtggaacacttgtagatgtattggga------aataatacaggattagcaatgctatctatatccaataattcat |
118 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |||||||||||| ||||||||| || || ||||||||| ||||||||||| || |
|
|
| T |
5173482 |
ttattactgaataataacaactttagtggaacacttgatgatgtattgggaaagggaaataatacaagaatactaatgctatccatatccaataactcga |
5173581 |
T |
|
| Q |
119 |
tctcaggcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcagatccctattgagatttc |
218 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||||||||| | |||||||||||| || |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5173582 |
tcacaggcagaattcctagttcaattgggatgttttctaacatgtatgtccttcttatgtctaaaaatcaattagaaggtcagatccctattgagatttc |
5173681 |
T |
|
| Q |
219 |
caacatgtcaaagcttgaaattattgatctttctcagaacaagttaattggatcaatccca |
279 |
Q |
| |
|
||||||||| | ||| | ||| | ||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
5173682 |
caacatgtccagtctttatattttggatctttctcaaaacaagttaattggagcaatccca |
5173742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 103 - 312
Target Start/End: Original strand, 7142800 - 7143012
Alignment:
| Q |
103 |
atatccaataattcattctcaggcacaattcctagttcaattgggacgttttctaacatggaagtccttcttatggctgaaaatctattagaaggtcaga |
202 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||| |||||| ||| || || ||||| ||||| ||||||||| ||||||||| ||| |
|
|
| T |
7142800 |
atatccaataattcaatctcaggaacaattcctagttcaattgggatgttttcaaacctgctagcccttcgtatggttgaaaatcttttagaaggtgaga |
7142899 |
T |
|
| Q |
203 |
tccctattgagat---ttccaacatgtcaaagcttgaaattattgatctttctcagaacaagttaattggatcaatcccagatttaagtagtttgacata |
299 |
Q |
| |
|
|||| |||| ||| ||| |||||||| | |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
7142900 |
tcccaattgggatgttttcaaacatgtctattcttgaatatattgatctttctcaaaacaagttaattggatcaatcccagatttaagtagtttgaaaaa |
7142999 |
T |
|
| Q |
300 |
tctaaggttcttg |
312 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
7143000 |
tctaaggctcttg |
7143012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 7142745 - 7142791
Alignment:
| Q |
25 |
ttatttctcaataataacaactttagtggaacacttgtagatgtatt |
71 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
7142745 |
ttatttctcaataataacaactttggtggaacactggaagatgtatt |
7142791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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