View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_45 (Length: 290)
Name: NF5918_low_45
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 43731289 - 43731553
Alignment:
| Q |
20 |
ccaaaactatcattaagttagaagagactcataacatttcatctaattactttagatcaagctacgtaacttttatagtgttaaaccagttaaacnnnnn |
119 |
Q |
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| T |
43731289 |
ccaagactatgattaagttagaagagactcatagcatctcatctaaacaccgtagatcaagctacgtaacttttatagtgttaaaccagttaaacttttt |
43731388 |
T |
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| Q |
120 |
nncgtatgaaaaaagtttggtccaaatttatttgtcttttcacccatgtagagtacacttcaattcaactttcatatgggtatcgcttccaatactgtaa |
219 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43731389 |
ttcgtatgaaaagagtttggtccaaatttatttgtcttttcactcatgtagagtacacttcaattcaactttcatatgggtatcgcttccaatattgtaa |
43731488 |
T |
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| Q |
220 |
tctatctattgatggttaagatttttatttatgtgctgtcatcctataccatgttcctatgctac |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43731489 |
tctatctattgatggttaagatttttatttatgtgctgtcatcctataccatgttccaatgctac |
43731553 |
T |
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