View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_49 (Length: 256)
Name: NF5918_low_49
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_49 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 6943236 - 6943408
Alignment:
| Q |
29 |
gcattaaattacaaccatacaaagatccatatgaatttttaaaa-ctgtgcagcaattagccaagtctccaagagataaatgattgaaacttacctcttg |
127 |
Q |
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| T |
6943236 |
gcattaagtttcaaccatacaaagatccatatcaatttttaaaaactgtgcagcaattagctaagtctccaagagattaatgattgaaacttacctcatg |
6943335 |
T |
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| Q |
128 |
ataattacaggcattcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagct |
200 |
Q |
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| T |
6943336 |
ataattacaggcattcatgaagaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct |
6943408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 6787569 - 6787344
Alignment:
| Q |
13 |
aaaatatacattcaacgcattaaattacaaccatacaaagatccatatgaattttt-aaaactgtgcagcaattagccaagtctcc-aagagataaatga |
110 |
Q |
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| T |
6787569 |
aaaatatacattaaatgcattgagtttcacccatacaaagatccatatgaattttttaaaactgtgcagccattagctaagtctcccaagag-taaatgc |
6787471 |
T |
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| Q |
111 |
ttgaaacttacctcttgataattacaggcattcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagctgatttagaaa |
210 |
Q |
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| T |
6787470 |
ttgaaacttacctc-------------------atgaaaaggaattggatattccataaacgtccgggaggttagcaaacaaaacaagctgattttgaaa |
6787390 |
T |
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| Q |
211 |
acttggcagttaagtcaagacaagctcttgcagttactttgttctt |
256 |
Q |
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| T |
6787389 |
acttggttgttaagacaggacatgctcttgcagttactttgttctt |
6787344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 6940139 - 6940212
Alignment:
| Q |
127 |
gataattacaggcattcatgaaaaggtattggattttccataaacgtccaggaggttagcaaacagaagaagct |
200 |
Q |
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| T |
6940139 |
gataattacaggcattcatgaaaaggtattggattttccataaacgtccgggaggttagcaaacagaagaagct |
6940212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 6940066 - 6940143
Alignment:
| Q |
29 |
gcattaaattacaaccatacaaagatccatatgaatttttaaaactgtgcagcaattagccaagtctccaagagataa |
106 |
Q |
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| T |
6940066 |
gcattaactttcaaccatacaaagatccatatgaatttttaaaactgtgcagcaattagctaagtctccaagagataa |
6940143 |
T |
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