View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_52 (Length: 253)
Name: NF5918_low_52
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_52 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 36748400 - 36748637
Alignment:
| Q |
16 |
atgaaaccaatcttttctgtggatcatgatataagcaaagctatgaatcaaaaagtgtatttgatttcatataacaacacaagaaaaaccatgatattga |
115 |
Q |
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| T |
36748400 |
atgaaaccaatcttttctgtggatcatgatataagcaaatctatgaatcaaaaagtgtatttgatttcatataacaacacaagaaaaaccatgatattga |
36748499 |
T |
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| Q |
116 |
tgaaatgcataaactcaagaaataaaaggctatatatagtaatagtatacctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaa |
215 |
Q |
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| T |
36748500 |
tgaaatgcataaactcaagaaataaaaggctatatatagtaatagtatacctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaa |
36748599 |
T |
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| Q |
216 |
caatgatatctgtttctccaacaatatcttgtgagcaa |
253 |
Q |
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| T |
36748600 |
tgatgatatctgtttctccaacaatctcttgtgagcaa |
36748637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 12400187 - 12400125
Alignment:
| Q |
163 |
tacctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaacaatgatatc |
225 |
Q |
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| T |
12400187 |
tacctttccaagtgtgtaagcaagagcagaaccagcaactccagcacctacaatgatgatatc |
12400125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 12253137 - 12253199
Alignment:
| Q |
163 |
tacctttccaagtgtataggcaagagcagcaccagcaactccagcacctacaacaatgatatc |
225 |
Q |
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| T |
12253137 |
tacctttccaagtgtgtaagcaagagcagaaccagcaacaccagcacctacaatgatgatatc |
12253199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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