View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_6 (Length: 710)
Name: NF5918_low_6
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 7e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 305 - 560
Target Start/End: Complemental strand, 34561528 - 34561293
Alignment:
| Q |
305 |
tacctgaagatcaagggtttgaaaaggaacatctggagtgacacatagaacaaaacgatccacatttgagatagaagttccagaacaagatgatgatgcc |
404 |
Q |
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| T |
34561528 |
tacctgaagatcaagggtttgaaaaggaacatctggagtgacacatagaacaaaacgatccacatttgagatagaagttccagaacaagatgatgatgcc |
34561429 |
T |
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| Q |
405 |
ataattttccccagaaactgatnnnnnnntcaacggcttcaaattcttatggcacttgttttttccaaacagacttgttttttccaaacagaaacaaaca |
504 |
Q |
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| T |
34561428 |
ataattttccccagaaactgat-agaaaatcaacggcttcaaatttttatggcacttgttttttcc-------------------aaacagaaacaaaca |
34561349 |
T |
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| Q |
505 |
agtcaatcaatataattattatttttaaatatagtcacaacaaacataaaataatt |
560 |
Q |
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| T |
34561348 |
aatcaatcaatataattattatttttaaatatagtcacaacaaacataaaataatt |
34561293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 101 - 246
Target Start/End: Complemental strand, 34561725 - 34561580
Alignment:
| Q |
101 |
cgattccttatcttccatcggccattatcggaataattcaattcgagtacttctttgtacggagaaaatataaacaaactacattatcctaaaactatac |
200 |
Q |
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| T |
34561725 |
cgattccttatcttccatcggccattatcggaataattcaattcgagtacttctttgtacggagaaaatataaacaaactacattatcctaaaactatac |
34561626 |
T |
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| Q |
201 |
tagattatagtatctggataaaatattcctttttaggcaaagattt |
246 |
Q |
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| T |
34561625 |
tagactatagtatctggataaaatattcctttttaggcaaagattt |
34561580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 627 - 691
Target Start/End: Complemental strand, 34561220 - 34561156
Alignment:
| Q |
627 |
tcatccgattttgaataaataataaatgataattaatacatcttttagtagcagtaacagtaaat |
691 |
Q |
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| T |
34561220 |
tcatccgattttgaataaataataaatgataattaatacatcttttagtagcagtaacagtaaat |
34561156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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