View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_65 (Length: 226)
Name: NF5918_low_65
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 11589706 - 11589871
Alignment:
| Q |
14 |
aatactttcaatctaaaatggtttcctaaaatccgtggcaaagctgatcctacctattttggtgcacaaggtatatatttttattcaaatattatgcatt |
113 |
Q |
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| T |
11589706 |
aatactttcaatctaaaatggtttcctaaaatccgtggcaaagctgatcctacctattttggtgcacaaggtatatatttttattcaaatattatgcatt |
11589805 |
T |
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| Q |
114 |
tcactttttgtatgcttgc--gttcattaactatttaatgctgattaattaacataataatattca |
177 |
Q |
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| T |
11589806 |
tcattttttgtatgcatgcttgttcattaactactttatgttgattaattaacataataatattca |
11589871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 11103259 - 11103425
Alignment:
| Q |
14 |
aatactttcaatctaaaatggtttcctaaaatccgtggcaaagctgatcctacctattttggtgcacaaggtatat-atttttattcaaatattatgcat |
112 |
Q |
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| T |
11103259 |
aatactttcaatctaaaatggtttcctaaaatccgtggcaaagctgatcctacctattttggtgcacaaggtatataatttttattcaaatattatgcat |
11103358 |
T |
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| Q |
113 |
ttcactttttgtatgcttgc--gttcattaactatttaatgctgattaattaacataataatattca |
177 |
Q |
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| T |
11103359 |
ttcattttttgtatgcatgcttgttcattaactactttatgttgattaattaacataataatattca |
11103425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 11589893 - 11589926
Alignment:
| Q |
174 |
ttcaggtgaaacgatcctcatgtacacttttcca |
207 |
Q |
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| T |
11589893 |
ttcaggtgaaacgatcctcatgtacacttttcca |
11589926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 207
Target Start/End: Original strand, 11103450 - 11103480
Alignment:
| Q |
177 |
aggtgaaacgatcctcatgtacacttttcca |
207 |
Q |
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| T |
11103450 |
aggtgaaacgatcctcatgtacacttttcca |
11103480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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