View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_8 (Length: 644)
Name: NF5918_low_8
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_8 |
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| [»] scaffold0565 (2 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 218
Target Start/End: Complemental strand, 9070 - 8857
Alignment:
| Q |
5 |
gagcagcacagagtttgatatttctaaaatgttgaatctgtaaaacaatttcctttgttactccttaatcaaatcatagggtatgtatatgttgtagaca |
104 |
Q |
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| T |
9070 |
gagcaacacagagtttgatatttctaaaatgttgaatctgtaaaacaatttcctttgttactccttaatcaaatcatagggtatgtatatgttgtagaca |
8971 |
T |
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| Q |
105 |
ttttaaaccgttcttaataatgcagagctcttctctttagaagaactccaaaagtaatgatcacacatggtgtataatgttaaatccttagccagcttga |
204 |
Q |
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| T |
8970 |
ttttaaaccgttcttaataatgcagagctcttctctttagaagaactccaaaagttatgatcacacatggtgtataatgttaaatccttagccagcttga |
8871 |
T |
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| Q |
205 |
tccaaacaaaaaac |
218 |
Q |
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| T |
8870 |
tccaaacaaaaaac |
8857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 374 - 584
Target Start/End: Complemental strand, 8857 - 8648
Alignment:
| Q |
374 |
caaaattaatccttatttcaaaaattaaaagttgaagattaatgnnnnnnnncatttgtacttgtgacgataacatcacaaagcgaaatatatacatgtt |
473 |
Q |
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| T |
8857 |
caaaagtaatccttatttcaaaaattaaaagttgaagattaatgaaaaaaaacatttgtacttgtgacgataacatcacaaagcgaaatatatacatgtt |
8758 |
T |
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| Q |
474 |
ccgttgattgttaacttgtcttgtagagttgttgtatttatagcacatgcctcatatattcattccaacattagccgatgtcggctttgatcacacaccg |
573 |
Q |
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| T |
8757 |
ccgttgattgttaacttgtcttgtagagttgttgtatttatagcacatgcctcatatattcattccaacattagccgatgtcggcttt-atcacacaccg |
8659 |
T |
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| Q |
574 |
ttactcttttc |
584 |
Q |
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| T |
8658 |
ttactcttttc |
8648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 480 - 559
Target Start/End: Original strand, 5665013 - 5665092
Alignment:
| Q |
480 |
attgttaacttgtcttgtagagttgttgtatttatagcacatgcctcatatattcattccaacattagccgatgtcggct |
559 |
Q |
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| T |
5665013 |
attgataacttgtctagtagagctgctgtatatatagcacaggcatcatatattcgttccaacattagccgatgtgggct |
5665092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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