View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5918_low_9 (Length: 618)
Name: NF5918_low_9
Description: NF5918
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5918_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 230 - 518
Target Start/End: Complemental strand, 34769321 - 34769036
Alignment:
| Q |
230 |
ctctaatcttctccaaaaatatcaattttcactatatcaggccaaacctatttgtcatcctcactcctctatcacatttacccttccttctcctctcctt |
329 |
Q |
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| T |
34769321 |
ctctaatcttctccaaaaatatcaattttcactatatcatgccaaacctatttgtcatcctcactcctctatcacatttacccttccttctcctctcctt |
34769222 |
T |
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| Q |
330 |
tttccctacacatgtatatgaaggaacttttggcaacaaaataaggttgcaactaaagtaatgcatgtcttcaaggacatacaataagaaatatatggtc |
429 |
Q |
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| T |
34769221 |
tttccctacacatgtatatgaaggaacttttggcaacaaaataaggttgcaacgaaagtaatgcatgtcttcaaggacatacaataagaaatatatggtc |
34769122 |
T |
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| Q |
430 |
tcgggaagtgtggggcttgagtcagatgtatccagaatccgatgaagctgaagaagtagtcgctataatctggagcaactcttatatag |
518 |
Q |
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| T |
34769121 |
tcgggaagtgtggggctcgagccagatgtatccagaatccgatgaagctgaaaaagtagtcgct---atttggagcaactcttacatag |
34769036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 110 - 235
Target Start/End: Complemental strand, 34769819 - 34769694
Alignment:
| Q |
110 |
actggttttaaaaagagggaccaaaactttaacttcgataaagcatggaattataaatacatttaatcctttactctgtattttttaaaataaataattg |
209 |
Q |
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| T |
34769819 |
actggttttaaaaagagggaccaaaactttaacttcggtaaaacatggaattataaatacatttaatcctttactctttattttttaaaataaataattg |
34769720 |
T |
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| Q |
210 |
gtgtttccaatgctctcttactctaa |
235 |
Q |
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| T |
34769719 |
gtgtttccaatgctctcttactctaa |
34769694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 34769924 - 34769886
Alignment:
| Q |
7 |
atcacatcattgtcatgttatcaatgatgatgtcacaac |
45 |
Q |
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| T |
34769924 |
atcacatcattgtcatgttatcagtgatgatgtcacaac |
34769886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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