View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919-Insertion-1 (Length: 487)
Name: NF5919-Insertion-1
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919-Insertion-1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 102 - 487
Target Start/End: Original strand, 3683022 - 3683397
Alignment:
| Q |
102 |
tcacaaatatgacttttctatttagtagatccatatatttctctc--aaggtcccatctaacttcacaaatcataagcttccaacacacggagtattgct |
199 |
Q |
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| T |
3683022 |
tcacaaatatgacttttctatttagtagatccatagatttctctctcaaggtcccatctaacttcacaaatcataagcttccaacacacggagtattgct |
3683121 |
T |
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| Q |
200 |
atagtgctaaaattctcagccttaacatatgaaagtcatgagtccaccttagagnnnnnnnnnnnnnnnnnntaaccaaatttttaaacttataatgatg |
299 |
Q |
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| T |
3683122 |
atagtgctaaaattctcagccttaacatatgaaagtcatgagtccaccttaga------------tatatattaaccaaattattaaacttataatgatg |
3683209 |
T |
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| Q |
300 |
ggcatataaacacacacctcatcaaccatccaacaccatgaacactataaatagagtccagtgatttcttattttcatacaaactcacttgagcctccac |
399 |
Q |
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| T |
3683210 |
ggcatataaacacacacctcatcaaccatccaacaccatgaacactataaatagagtccagtgatttcttattttcatacaaactcacttgagcctccac |
3683309 |
T |
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| Q |
400 |
ttttacacttataggtttagttattaattgaagaaacgtacacaagctaccatcatcatttttcatatcatgacaccgaaaaattgtt |
487 |
Q |
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| T |
3683310 |
ttttacacttataggtttagttattaattgaagaaacgtacacaagctaccatcatcatttttcatatcatgacaccgaaaaattgtt |
3683397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 313 - 487
Target Start/End: Original strand, 3702005 - 3702181
Alignment:
| Q |
313 |
acacctcatcaaccatccaacaccatgaacactataaatagagtccagtgatt--tcttattttcatacaaactcacttgagcctccacttttacactta |
410 |
Q |
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| T |
3702005 |
acacctcattaacctttcaacaccatgaacactataaatagagtacaattaatctttttattttcatacaaactcacttgagcctccacttttacaatta |
3702104 |
T |
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| Q |
411 |
taggtttagttattaattgaagaaacgtacacaagctaccatcatcatttttcatatcatgacaccgaaaaattgtt |
487 |
Q |
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| T |
3702105 |
taggtttagttattaaccgaagaaacgtacacaagctaccatcatcacttttcatatcatgacaccgaaaaattgtt |
3702181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 3682886 - 3682988
Alignment:
| Q |
9 |
ataaatttaaaacaatatgattatacgaggatttttctactatgagagtgaagtaaatgaaagcatcttggtcattcccaagttatatggatctcacaaa |
108 |
Q |
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| T |
3682886 |
ataaatttaaaacaatatgattatacgaggatttttctactatgagtgtgaagtaaatgaaagcatcttggtcattcccaagttatatggatctcacata |
3682985 |
T |
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| Q |
109 |
tat |
111 |
Q |
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||| |
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| T |
3682986 |
tat |
3682988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 3701836 - 3701891
Alignment:
| Q |
130 |
atccatatatttctctcaaggtcccatctaacttcacaaatcataagcttccaaca |
185 |
Q |
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| T |
3701836 |
atccatagatttctctcaaggccccgccttacttgacaaatcataagcttccaaca |
3701891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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