View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919-Insertion-2 (Length: 462)
Name: NF5919-Insertion-2
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 22 - 462
Target Start/End: Original strand, 26775839 - 26776279
Alignment:
| Q |
22 |
gttcaatcaataatacagtgtatacctttgaagcaaacgtaatgattcaacgttgattaaattaacctaggtttgttttcctttatccaactctgattct |
121 |
Q |
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| T |
26775839 |
gttcaatcaataatacagtgtatacctttgaagtaaacgtaatgattcaacgttgattaaattaacctaggtttgttttcctttatccaactctgattct |
26775938 |
T |
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| Q |
122 |
aattcttttatttcttatgaataggtaataaattcacaagaatttaattcttttcaagtctgaatcaaaataatggatgaagtgagtagtgagtggagca |
221 |
Q |
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| T |
26775939 |
aattcttttatttcttatcaataggtaataaattcacaagaatttaattcttttcaagtctgaatcaaaataatggatgaagtgagtagtgagtggagca |
26776038 |
T |
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| Q |
222 |
gcgagcagaataaattgtttgaatatgcattggccaattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaatcttt |
321 |
Q |
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| T |
26776039 |
gcgagcagaataaattgtttgaatatgcattggccaattatcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaaacttt |
26776138 |
T |
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| Q |
322 |
ggaacaaattaaacatcactatgaggttttgatagatgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttcaaactca |
421 |
Q |
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| T |
26776139 |
ggaacaaattaaacatcactatgaggttttggtagatgatattcacaacattgaatctggttttgtgcctctaccagattatgattctttttcaaactca |
26776238 |
T |
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| Q |
422 |
acaaagtgtactattgtcaaaaagggaattaaggcttccgg |
462 |
Q |
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| T |
26776239 |
acaaagtgtactattgttaaaaagggaactaaggcttccgg |
26776279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 239 - 417
Target Start/End: Complemental strand, 26556619 - 26556441
Alignment:
| Q |
239 |
tttgaatatgcattggccaattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaatctttggaacaaattaaacatc |
338 |
Q |
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|||||| || ||||||| ||||| || || || | |||||||||||||||||| |||||||| | |||||| |||||| |||| ||| | ||||||| || |
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| T |
26556619 |
tttgaaaatacattggcgaattatcccgaggacgctgtggatcgatgggagaaaattgcggctgatgtgcccgggaaaactttagaagagattaaacgtc |
26556520 |
T |
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| Q |
339 |
actatgaggttttgatagatgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttcaaa |
417 |
Q |
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| T |
26556519 |
actatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
26556441 |
T |
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