View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919-Insertion-3 (Length: 390)
Name: NF5919-Insertion-3
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 42903744 - 42903466
Alignment:
| Q |
12 |
gggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatatagtttgtttgttgagtgacatagaaatggaatc |
111 |
Q |
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| T |
42903744 |
gggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatatagtttgtttgttgagtgacataaaaatggaatc |
42903645 |
T |
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| Q |
112 |
acttgtatcaaagacaagaagaatggtaagaggcagagaggaagtgtatgtggcagcaatgcctctaagggcttcaaagggaccaccacaattgcttatg |
211 |
Q |
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| T |
42903644 |
acttgtatcaaagacaagaagaatggtaagaggcagagaggaagtgtatgtggcagcaatgcctctaagggcttcaaagggaccaccacaattgcttatg |
42903545 |
T |
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| Q |
212 |
tctgctgcttactcccttaatatttgggatttgcagcatttcatggtcatcatcaaaccttcctcaccttcacaggttc |
290 |
Q |
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| T |
42903544 |
tctgctgcttactcccttaatatttgggatttgcagcatttcatggtcatcatcaaaccttcctcaccttcacaggttc |
42903466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 42908727 - 42908538
Alignment:
| Q |
12 |
gggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatatagtttgtttgttgagtgacatagaaatggaatc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42908727 |
gggaccaaatgtattggataaatttgaaccattagtttctcttacaaaagtaggaatggataaatatagtttgtttgttgagtgacatagaaatggaatc |
42908628 |
T |
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| Q |
112 |
acttgtatcaaagacaagaagaatggt-----aagaggcagagaggaagtgtatgtggcagcaatgcctctaagggcttcaaagggacca |
196 |
Q |
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| T |
42908627 |
acttgtatcaaagacaagaagaatggtaagataagaggcagagaggaagtgtatgtggcagcaatgcctctaagggcttcaaagggacca |
42908538 |
T |
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