View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919-Insertion-5 (Length: 330)
Name: NF5919-Insertion-5
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 71 - 330
Target Start/End: Complemental strand, 29039917 - 29039657
Alignment:
| Q |
71 |
ttatagcaataagttacaaaata-ggcatgaaaatgttttagatacttacctgtgtgcacattgatcttctagttttgtgttcttaaacccttgatcaat |
169 |
Q |
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| T |
29039917 |
ttatagcaataagttacaaaaaaaggcatgaaaatgttttagatacttacctgtgtgcacattgatcttctagttttgtgttcttaaacccttgatcaat |
29039818 |
T |
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| Q |
170 |
ttcctcattccagtcctaaaaacaaacaatattcattaatataaagtgttcacagattgtgatgattttatttatttaacatattatatactatttacca |
269 |
Q |
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| T |
29039817 |
ttcctcattccagtcctaaaaacaaacaatattcattaatataaagtgttcacaaattgtgataattttatttatttaacatattatatactatttacca |
29039718 |
T |
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| Q |
270 |
ctgaatatacacgagcattccaatcatgttgatctgtgacattgcatttcctaagctcatg |
330 |
Q |
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| T |
29039717 |
ctgaatatacacgagcattccaatcatgttgatctgtgacattacatttcctaagctcatg |
29039657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 29018518 - 29018307
Alignment:
| Q |
116 |
ttacctgtgtgcacattgatcttctagttttgtgttcttaaacccttgatcaatttcctcattccagtcctaaaaacaaacaatattcattaatataaag |
215 |
Q |
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| T |
29018518 |
ttacctgtgtgtacattgatcttctagttttgtgctattgaacccatgttcaatttccttattccagtgctaaaaacaaacaatattcattaaaatcaag |
29018419 |
T |
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| Q |
216 |
tgttcacaga--ttgtgatgattttatttatttaacatattatatactatttaccactgaatatacacgagcattccaatcatgttgatctgtgacattg |
313 |
Q |
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| T |
29018418 |
ttttcataaaacatttgataatattattcatttgataaattatata-tatttaccactgaatatatacgagcattccaatcatgctggtctgtgacatta |
29018320 |
T |
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| Q |
314 |
catttcctaagct |
326 |
Q |
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| T |
29018319 |
cactgcctaagct |
29018307 |
T |
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