View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919_high_15 (Length: 260)
Name: NF5919_high_15
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15379470 - 15379718
Alignment:
| Q |
1 |
agattcaacttcaacttttactgggtttctcatttcacgagctacacaaattatcttatctaaaatccaaggtagacccaagtgcatacttttgattcct |
100 |
Q |
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| T |
15379470 |
agattcaacttcaacttttactgggtttctcatttcacgagctacacaaattatcttatctaaaatccaaggtagacccaaatgcatacttttgattcct |
15379569 |
T |
|
| Q |
101 |
gtagctatataaagatatgaaatgtcaatcacgagtagttgagatggttgggaagaattaacttttgtcaacaaaatgttgtgaagtactagtaatagtg |
200 |
Q |
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| T |
15379570 |
gtagcgatataaagatatgaaatgtcaatcacgagtagttgagatggttgggaagaattaatttgtgtcaacaaaatgttgtgaagtactagtaatagtg |
15379669 |
T |
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| Q |
201 |
aatttgtgttgtattgtactttaacttttcttcaatttgtgaatatatt |
249 |
Q |
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| T |
15379670 |
aatttgtgttgtattgtactttaacttttcttcaatttgtgaatatatt |
15379718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 7706745 - 7706694
Alignment:
| Q |
76 |
acccaagtgcatacttttgattcctgtagctatataaagatatgaaatgtca |
127 |
Q |
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| T |
7706745 |
acccaaatacatacttttaattcctgtagctacataaatatatgaaatgtca |
7706694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 7706683 - 7706607
Alignment:
| Q |
173 |
aaaatgttgtgaagtactagtaatagtgaatttgtgttgtattgtactttaacttttcttcaatttgtgaatatatt |
249 |
Q |
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| T |
7706683 |
aaaatgatgtaaaatactagtactagttaacttgtgttgtaatatactttaactttatttcagcttgtgaatatatt |
7706607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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