View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919_high_4 (Length: 488)
Name: NF5919_high_4
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 32 - 477
Target Start/End: Original strand, 26775839 - 26776284
Alignment:
| Q |
32 |
gttcaatcaataatacagtgtatacctttgaagcaaacgtaatgattcaacgttgattaaattaacctaggtttgttttcctttatccaactctgattct |
131 |
Q |
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| T |
26775839 |
gttcaatcaataatacagtgtatacctttgaagtaaacgtaatgattcaacgttgattaaattaacctaggtttgttttcctttatccaactctgattct |
26775938 |
T |
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| Q |
132 |
aattcttttatttcttatgaataggtaataaattcacaagaatttaattcttttcaagtctgaatcaaaataatggatgaagtgagtagtgagtggagca |
231 |
Q |
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| T |
26775939 |
aattcttttatttcttatcaataggtaataaattcacaagaatttaattcttttcaagtctgaatcaaaataatggatgaagtgagtagtgagtggagca |
26776038 |
T |
|
| Q |
232 |
gcgagcagaataaattgtttgaatatgcattggccaattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaatcttt |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26776039 |
gcgagcagaataaattgtttgaatatgcattggccaattatcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaaacttt |
26776138 |
T |
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| Q |
332 |
ggaacaaattaaacatcactatgaggttttgatagatgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttcaaactca |
431 |
Q |
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| T |
26776139 |
ggaacaaattaaacatcactatgaggttttggtagatgatattcacaacattgaatctggttttgtgcctctaccagattatgattctttttcaaactca |
26776238 |
T |
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| Q |
432 |
acaaagtgtactattgtcaaaaagggaattaaggcttccggttctt |
477 |
Q |
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| T |
26776239 |
acaaagtgtactattgttaaaaagggaactaaggcttccggttctt |
26776284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 249 - 427
Target Start/End: Complemental strand, 26556619 - 26556441
Alignment:
| Q |
249 |
tttgaatatgcattggccaattagcctgacgatgttgtggatcgatgggagaagattgcggccggtgtgcctgggaaatctttggaacaaattaaacatc |
348 |
Q |
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|||||| || ||||||| ||||| || || || | |||||||||||||||||| |||||||| | |||||| |||||| |||| ||| | ||||||| || |
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| T |
26556619 |
tttgaaaatacattggcgaattatcccgaggacgctgtggatcgatgggagaaaattgcggctgatgtgcccgggaaaactttagaagagattaaacgtc |
26556520 |
T |
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| Q |
349 |
actatgaggttttgatagatgatatccacaacattgaatctggttttgtgcctccaccagattatgattctttttcaaa |
427 |
Q |
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|||||| ||||||| | ||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26556519 |
actatgtggttttgtttgatgatatcaaccacattgaatctggttttgtgcctctgccagattatgattctttttcaaa |
26556441 |
T |
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