View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919_low_1 (Length: 603)
Name: NF5919_low_1
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 38062396 - 38062754
Alignment:
| Q |
1 |
ataccatttttcaaacgaactactcctgtatccctccaaaacaaaccaagtcaacaaaatcaatgtagttggtgcgttgctatgatatttcacctgcaat |
100 |
Q |
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| T |
38062396 |
ataccatttttcaaacgaactactcctctatccctccaaaacaaaccaagtcaacaaaatcaatgtagttggtgcgttgctatgatatttcacctgcaat |
38062495 |
T |
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| Q |
101 |
cgaaacactttttatgagccaaaaagaatcaagttaagattatctcttcaacttgcatttgacaccaataatatatcgtttacctttgctttgcagctat |
200 |
Q |
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| T |
38062496 |
cgaa-cactttttatgagccaaaaagaatcaagttaagactatctcttcaacttgcatttgacatcaataatatatcgtttacctttgctttgcagctat |
38062594 |
T |
|
| Q |
201 |
atgagtattcaattccataaactgacattgcttttcctttcatcaaatatgtggctttacagtaatcacaattaaaaccaaacaatgaaagtgtatatat |
300 |
Q |
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| T |
38062595 |
atgagtattcgattccataaactgacattgcttttcctttcatcaaatatgtggctttac--taatcacaattaaaaccaaacaatgaaagtgtatatat |
38062692 |
T |
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| Q |
301 |
tgtctatatgttgtgacttttgacaacccatgaaggctgggtataccgtatacgtaccaacc |
362 |
Q |
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| T |
38062693 |
tgtctatatgttgtgacttttgacaacccatgaaggctgggtataccgtatacgtaccaacc |
38062754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 489 - 556
Target Start/End: Original strand, 38062861 - 38062927
Alignment:
| Q |
489 |
atgatgttataacatatctatttaagaagtcggcatctcataaaggatgttcatacaagctcagacgt |
556 |
Q |
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| T |
38062861 |
atgatgttataacatatctatt-aagaagtcggcatctcataagggatgttaatacaaggtcacacgt |
38062927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 468
Target Start/End: Original strand, 38062806 - 38062840
Alignment:
| Q |
434 |
ctatggatcttgcagttcaaataattttgggagag |
468 |
Q |
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| T |
38062806 |
ctatggatcttgcagttcaaataattttgggagag |
38062840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 386 - 416
Target Start/End: Original strand, 38062778 - 38062808
Alignment:
| Q |
386 |
ggcggatgaaagtaaggtttaaccatgacta |
416 |
Q |
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| T |
38062778 |
ggcggatgaaagtaaggtttaaccatgacta |
38062808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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