View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5919_low_7 (Length: 345)
Name: NF5919_low_7
Description: NF5919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5919_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 323
Target Start/End: Original strand, 42903440 - 42903744
Alignment:
| Q |
19 |
atgtaagagaggaaggaataggattggaacctgtgaaggtgaggaaggtttgatgatgaccatgaaatgctgcaaatcccaaatattaagggagtaagca |
118 |
Q |
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| T |
42903440 |
atgtaagagaggaaggaataggattggaacctgtgaaggtgaggaaggtttgatgatgaccatgaaatgctgcaaatcccaaatattaagggagtaagca |
42903539 |
T |
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| Q |
119 |
gcagacataagcaattgtggtggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctcttaccattcttcttgtctttgata |
218 |
Q |
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| T |
42903540 |
gcagacataagcaattgtggtggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctcttaccattcttcttgtctttgata |
42903639 |
T |
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| Q |
219 |
caagtgattccatttctatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaatggttcaaatttatccaatacatttg |
318 |
Q |
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| T |
42903640 |
caagtgattccatttttatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaatggttcaaatttatccaatacatttg |
42903739 |
T |
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| Q |
319 |
gtccc |
323 |
Q |
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||||| |
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| T |
42903740 |
gtccc |
42903744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 139 - 323
Target Start/End: Original strand, 42908538 - 42908727
Alignment:
| Q |
139 |
tggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctctt-----accattcttcttgtctttgatacaagtgattccattt |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42908538 |
tggtccctttgaagcccttagaggcattgctgccacatacacttcctctctgcctcttatcttaccattcttcttgtctttgatacaagtgattccattt |
42908637 |
T |
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| Q |
234 |
ctatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaatggttcaaatttatccaatacatttggtccc |
323 |
Q |
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| T |
42908638 |
ctatgtcactcaacaaacaaactatatttatccattcctacttttgtaagagaaactaatggttcaaatttatccaatacatttggtccc |
42908727 |
T |
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