View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5920-Insertion-1 (Length: 1106)
Name: NF5920-Insertion-1
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 648; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 228 - 981
Target Start/End: Original strand, 5180312 - 5181073
Alignment:
| Q |
228 |
ttgttattcagagggctgtgtaccggtggatgttggaccctgcagaccgtgacgctgctttgatcaatgtagcaatcaggaatggcaacaaagactatca |
327 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5180312 |
ttgttattcagagggccgtgtaccggtggatgttggaccctgcagaccgtgacgctgttttgatcaatgtagcaatcaggaatggcaataaagactatca |
5180411 |
T |
|
| Q |
328 |
tgtggttgctgaaattgcttctgtgctatcaactgaagagctcttggcagtgaggcgtgcctatcataaccgctacaagcgttccatcgaagaagacgtg |
427 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5180412 |
tgtggttgctgaaattgcttctgtgctatcaactgaagagctcttggcagtgaggcgtgcctatcataaccgctacaagcgttccatcgaagaagacgtg |
5180511 |
T |
|
| Q |
428 |
tctgctcacaccaccggtcatcttcgccaggcaagtcattctttattgtcatcaaatgatgtttaagcaatccacaagcaacataaaactcactcgaatc |
527 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5180512 |
tctgctcacactaccggtcatcttcgccaggcaagtcattctttattgtcatcaaatgatgtttaagcaatccacaagcaacataaaactcactcgaatc |
5180611 |
T |
|
| Q |
528 |
ggattaatggattatgacataatggtagcttcattatta--ttatctccataatgtatttagcccctcaatgttcaataatttttattgttgtttgcaga |
625 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5180612 |
ggattaatggattatgatataatggtagcttcattattattttgtctccataatgtatttagcccctcaatgttcaataatttttattgttgtttgcaga |
5180711 |
T |
|
| Q |
626 |
acgcaatttgaaaccatggttttaattatagatgtactaacggtctgaatgtttacttgattttgagcagcttttggttggattggtgagctcatttagg |
725 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5180712 |
acgcaatttaaaaccatggttttaattatagatgtactaacggtctgaatgtttacttgattttgagcagcttttggttggattggtgagctcatttagg |
5180811 |
T |
|
| Q |
726 |
tatgagggagatgagatcaatgcaaaattggcacaaactgaagctaatattattcatgaaagtgtcaaggaaaagaaaggcaacaatgaagaagtcatta |
825 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5180812 |
tatgagggagatgagatcaatgcaaaattggcacaaactgaggctaatattattcatgaaagtgtcaaggaaaagaaaggcaacaatgaagaagtcatta |
5180911 |
T |
|
| Q |
826 |
ggattcttaccacaaggagtaagactcaacttgtcgcaactttcaaccgttatagagatgagcatgg-atctccattagta--gtacaaaataaataact |
922 |
Q |
| |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||| ||||| ||||||||||| |
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| T |
5180912 |
ggattcttaccacaaggagcaagactcaacttgtggcaactttcaaccgttatagggatgaacatggcatctccattagtaaggtacacaataaataact |
5181011 |
T |
|
| Q |
923 |
tttttca-ttacggat-acgtgtcaacatag-tgagatatcagttgtctataccgacatctt |
981 |
Q |
| |
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||||||| |||||||| | |||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
5181012 |
tttttcatttacggataatgtgtcaacatagttgagatatcagttggctataccgacatctt |
5181073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 5180169 - 5180247
Alignment:
| Q |
9 |
actttgaggtatagtattcaaacattagatttgtttcctctaaattgaccaactcactttagacactaaagcgaataat |
87 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5180169 |
actttgaggtatagtattcaaacattagatttgtctccttgaaattgaccaactcactttagacactaaagcgaataat |
5180247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 686 - 871
Target Start/End: Original strand, 5185311 - 5185496
Alignment:
| Q |
686 |
ttttgagcagcttttggttggattggtgagctcatttaggtatga-gggagatgagatcaatgcaaaattggcacaaactgaagctaatattattcatga |
784 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||||| ||||| |||| ||||||||| ||||||||| ||||||| |||| ||||||| |
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| T |
5185311 |
ttttgagcagcttttggtggggttggtgagttcatttaggtatgatgggag-tgaggtcaatgcaagtttggcacaatgtgaagctgatatgcttcatga |
5185409 |
T |
|
| Q |
785 |
aagtgtcaaggaaaagaaaggcaacaatgaagaagtcattaggattcttaccacaaggagtaagactcaacttgtcgcaactttcaa |
871 |
Q |
| |
|
| | || | ||||| ||| |||||||||| ||||| |||||||| |||||||| || || |||||||| ||||||||||| |
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|
| T |
5185410 |
ggctattaaaaacaagaattacaatcatgaagaagtaattagaattcttacaacaaggagcaaaacacaacttgtagcaactttcaa |
5185496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 686 - 871
Target Start/End: Original strand, 5237706 - 5237891
Alignment:
| Q |
686 |
ttttgagcagcttttggttggattggtgagctcatttaggtat-gagggagatgagatcaatgcaaaattggcacaaactgaagctaatattattcatga |
784 |
Q |
| |
|
|||||||||||||||||| || |||||||| |||||||||||| | ||||| ||| ||||||||| ||||||||| ||||||| |||| ||||||| |
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|
| T |
5237706 |
ttttgagcagcttttggtggggttggtgagttcatttaggtatggtgggag-tgaagtcaatgcaagtttggcacaatgtgaagctgatatgcttcatga |
5237804 |
T |
|
| Q |
785 |
aagtgtcaaggaaaagaaaggcaacaatgaagaagtcattaggattcttaccacaaggagtaagactcaacttgtcgcaactttcaa |
871 |
Q |
| |
|
| |||| | ||||| ||| |||||||||| || || || ||||| |||||||| || || |||||||| ||||||||||| |
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|
| T |
5237805 |
ggctatcaaacacaagaatcacaatcatgaagaagtaatcagaatacttacaacaaggagcaaaacacaacttgtagcaactttcaa |
5237891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 692 - 892
Target Start/End: Complemental strand, 14152606 - 14152406
Alignment:
| Q |
692 |
gcagcttttggttggattggtgagctcatttaggtatgagggagatgagatcaatgcaaaattggcacaaactgaagctaatattattcatgaaagtgtc |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || | ||| |||||| ||| |||||| || ||||||| ||||| ||||||| |||| |
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| T |
14152606 |
gcagcttttggttggattggtgagctcatttagatatgatggtgttgaaatcaatccaattttggcaaaacatgaagctgatattcttcatgaggctgtc |
14152507 |
T |
|
| Q |
792 |
aaggaaaagaaaggcaacaatgaagaagtcattaggattcttaccacaaggagtaagactcaacttgtcgcaactttcaaccgttatagagatgagcatg |
891 |
Q |
| |
|
|| | |||||||| |||| ||||||||| || ||||| |||| |||||||| |||||||||||| ||||||||||||||||| ||||||| |||| |
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|
| T |
14152506 |
aaaaacaagaaaggaaacattgaagaagttatcaggatccttattacaaggagcaagactcaacttaaggcaactttcaaccgttaccgagatgatcatg |
14152407 |
T |
|
| Q |
892 |
g |
892 |
Q |
| |
|
| |
|
|
| T |
14152406 |
g |
14152406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 237 - 467
Target Start/End: Complemental strand, 14174407 - 14174177
Alignment:
| Q |
237 |
agagggctgtgtaccggtggatgttggaccctgcagaccgtgacgctgctttgatcaatgtagcaatcaggaatggcaacaaagactatcatgtggttgc |
336 |
Q |
| |
|
|||| ||||||||||| |||||| |||| ||||| || || || |||| |||| ||||||||| |||| | |||| | |||| || |||||| || |
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| T |
14174407 |
agagagctgtgtaccgttggatgctggaacctgcggatcgcgatgctgttttggccaatgtagccatcaaggatggaagcaaaagttaccatgtgattat |
14174308 |
T |
|
| Q |
337 |
tgaaattgcttctgtgctatcaactgaagagctcttggcagtgaggcgtgcctatcataaccgctacaagcgttccatcgaagaagacgtgtctgctcac |
436 |
Q |
| |
|
|||||||| |||||| || ||| ||||||| | |||||| |||| ||||| ||||||||||| ||||||| ||| | |||||||| | ||||||| |
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|
| T |
14174307 |
tgaaattgtttctgttctttcacctgaagaagtgttggcaatgagacgtgcttatcataaccgttacaagcattctttagaagaagatttagctgctcat |
14174208 |
T |
|
| Q |
437 |
accaccggtcatcttcgccaggcaagtcatt |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14174207 |
accaccggtcatcttcgccaggcaagtcatt |
14174177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 692 - 892
Target Start/End: Complemental strand, 14174071 - 14173871
Alignment:
| Q |
692 |
gcagcttttggttggattggtgagctcatttaggtatgagggagatgagatcaatgcaaaattggcacaaactgaagctaatattattcatgaaagtgtc |
791 |
Q |
| |
|
|||||| |||||||||||||||| ||| ||||| |||| || | |||||| ||| | ||||||||| ||||||||||| | ||| |||||||| || |
|
|
| T |
14174071 |
gcagctgttggttggattggtgacctcgtttagatatggcggtgctgagataaatccgaaattggcaaaaactgaagctgacattcttcatgaatcaatc |
14173972 |
T |
|
| Q |
792 |
aaggaaaagaaaggcaacaatgaagaagtcattaggattcttaccacaaggagtaagactcaacttgtcgcaactttcaaccgttatagagatgagcatg |
891 |
Q |
| |
|
|| || || ||||| || ||||||||| |||||| || ||||| |||||||| |||||||| ||| | |||||||||||||| || |||||||| |||| |
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|
| T |
14173971 |
aaagagaaaaaaggaaatcatgaagaagccattagaatccttactacaaggagcaagactcagcttttggcaactttcaaccgctacagagatgaccatg |
14173872 |
T |
|
| Q |
892 |
g |
892 |
Q |
| |
|
| |
|
|
| T |
14173871 |
g |
14173871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 686 - 770
Target Start/End: Complemental strand, 14167114 - 14167030
Alignment:
| Q |
686 |
ttttgagcagcttttggttggattggtgagctcatttaggtatgagggagatgagatcaatgcaaaattggcacaaactgaagct |
770 |
Q |
| |
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|||||||||||||||||| || | |||| |||||||||||| || |||||||||||| |||||||||| |||||||||||| |
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|
| T |
14167114 |
ttttgagcagcttttggtagggctagtgactgcatttaggtatgttggtgatgagatcaatccaaaattggcgcaaactgaagct |
14167030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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