View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920-Insertion-10 (Length: 430)
Name: NF5920-Insertion-10
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920-Insertion-10 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 98 - 430
Target Start/End: Complemental strand, 1196854 - 1196522
Alignment:
| Q |
98 |
tgacccaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactgtattacctcaacaccacattcacaagccaatttcaacca |
197 |
Q |
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| T |
1196854 |
tgacacaccttggcaacgcatgataatagtattggtcttgattaacccattgggaatactctattacctcaacaccacattcacaagccaatttcaacca |
1196755 |
T |
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| Q |
198 |
aatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattctt |
297 |
Q |
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| T |
1196754 |
aatatcaacatcctttgacatgtacttaggtacaaaaccgtttaaatcgatcttaaattctttgataggcaaactttggtcacgaaacattagcattctt |
1196655 |
T |
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| Q |
298 |
cttttcacataatcaccaaattctaagatctttctcttcctcacgctatcttccattggtggtggagacattcctataatttgattactatggaaataca |
397 |
Q |
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| T |
1196654 |
ctcttcacataattaccaaattctaagatctttctcttcctcacactatcttccattggtggtggagacattcctataatttgattactatggaaataca |
1196555 |
T |
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| Q |
398 |
atatgggaaaggtataccatgtgactaaccaag |
430 |
Q |
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| T |
1196554 |
atatgggaaaggtataccatgtgactaaccaag |
1196522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 147 - 430
Target Start/End: Complemental strand, 1180463 - 1180180
Alignment:
| Q |
147 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaaatatcagcatcctttgacatgtacctaaatacaaaaccgttcacattg |
246 |
Q |
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| T |
1180463 |
ttgggaatactgtattacctcaacaccacattcacaagccaatttcaaccaattatcaacatcctttgacatgtacctaactacaaaaccattcaaattg |
1180364 |
T |
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| Q |
247 |
agcttaaattttttgatagctaatctttggtcaagaaacattagcattcttcttttcacataatcaccaaattctaagatctttctcttcctcacgctat |
346 |
Q |
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| T |
1180363 |
agcctaaattttttgatagccaaactttggtcacgaaacattagcattcttctcttcacataatcaccaaattctaagatctttctcttcctcacactat |
1180264 |
T |
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| Q |
347 |
cttccattggtggtggagacattcctataatttgattactatggaaatacaatatgggaaaggtataccatgtgactaaccaag |
430 |
Q |
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| T |
1180263 |
cttccattggtggtggagacattcctataatttgattactatggaaatacaatataggaaaagtataccatgtgtctaaccaag |
1180180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 357
Target Start/End: Complemental strand, 1185747 - 1185630
Alignment:
| Q |
240 |
cacattgagcttaaattttttgatagctaatctttggtcaagaaacattagcattcttcttttcacataatcaccaaattctaagatctttctcttcctc |
339 |
Q |
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| T |
1185747 |
cacattgagcttaaattctttgatagtcaagctttgatcacgaaattttagcattctccttttcacataatcacaaaattctaaggtctttctcttcctc |
1185648 |
T |
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| Q |
340 |
acgctatcttccattggt |
357 |
Q |
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| T |
1185647 |
acactatcttctattggt |
1185630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 1197090 - 1196996
Alignment:
| Q |
8 |
accttaatgaatgctttggcgcacgaaaaagaa-tagttgcaggaca---gcttgcaagtaagatatttacatgagacgagaacaaatattcttt |
98 |
Q |
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| T |
1197090 |
accttaatgaatgctttggcgcatgaaaaagaaatagttgcaggacaacagcttgcaagtaagataattacatgagacgagaacaaatattcttt |
1196996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 1192288 - 1192245
Alignment:
| Q |
52 |
cagcttgcaagtaagatatttacatgagacgagaacaaatattc |
95 |
Q |
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| T |
1192288 |
cagcttgaaagtaagatatttacaagagacgagaataaatattc |
1192245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Complemental strand, 1185834 - 1185801
Alignment:
| Q |
141 |
aacccattgggaatactgtattacctcaacacca |
174 |
Q |
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| T |
1185834 |
aacccattgggaatactctattacctcaacacca |
1185801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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