View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920-Insertion-12 (Length: 415)
Name: NF5920-Insertion-12
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920-Insertion-12 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 45131329 - 45130923
Alignment:
| Q |
9 |
attaattcatgcacacatgtgcaattgcacttcttcacaatggcctaataatgaaaaagacattaattcatgtacaagcacacatgtgcaattgcacttc |
108 |
Q |
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| T |
45131329 |
attaattcatgcacacatgtgcaattgcacttcttcacaatggcctaataatgaaaaagacattaattcatgtacaagcacacatgtgcaattgcacttc |
45131230 |
T |
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| Q |
109 |
ttcacattacctaattataatatagaagaatcaacacgtacattttagagatggtagaaggcatatatatacgacatgtacattgatgcaacattgtagg |
208 |
Q |
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| T |
45131229 |
ttcacattgcctaattataatatagaagaatcaacacgtacattttagagatggtagaaggcatatatatacgacatgtacattgatgcaacattgtagg |
45131130 |
T |
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| Q |
209 |
tcaccaattaaaactgatggactcaaagtgaagattatcagccaaaccagaagcacaaattttagcaacttcatgtctcaattttcttggaccacaaacc |
308 |
Q |
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| T |
45131129 |
tcaccaattaaaactgatggactcaaagtgaagattatcagccaaaccagaagcacaaattttagcaacttcatgtctcaattttcttggaccacaaacc |
45131030 |
T |
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| Q |
309 |
ataactccaacatctttgtctttacactcaaacagaatttctgcaaaattaacaaattttatatatcactgtcctgttcatacaatcaacatggtaaaag |
408 |
Q |
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| T |
45131029 |
ataactccaacatctttgtctttacactcaaacagaatttctgcaaaattaacaaattttatatatcattgtcccgttgatacaatcgacatggtaaaag |
45130930 |
T |
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| Q |
409 |
atattag |
415 |
Q |
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| T |
45130929 |
atattag |
45130923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 68 - 366
Target Start/End: Complemental strand, 45114363 - 45114071
Alignment:
| Q |
68 |
acattaattcatgtacaagcacacatgtgcaattgcacttcttcac-attacctaattataata---tagaagaatcaacacgtacattttagag-atgg |
162 |
Q |
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| T |
45114363 |
acattaattcatgtacaggcacacttgtgcaattgcacttgttcacgattgcctaattataataacatagaggaatcaacatgaacgttttagaggatag |
45114264 |
T |
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| Q |
163 |
tagaaggcatatatatacgacatgtacattgatgcaacattgtaggtcaccaattaaaactgatggactcaaagtgaagattatcagccaaaccagaagc |
262 |
Q |
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| T |
45114263 |
taaaaggcatatatatgcgacatgtacattg-----------tagatcaccaattaaagctgattgattcgaagtgaagattatcagccaaaccagaagc |
45114175 |
T |
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| Q |
263 |
acaaattttagcaacttcatgtctcaattttcttggaccacaaaccataactccaacatctttgtctttacactcaaacagaatttctgcaaaattaaca |
362 |
Q |
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| T |
45114174 |
acatattctagcaacttcatgtctcatttttcttggaccacaagtcataactccaacatctttgccttcacactcaaacagaatttctgcaaaattaaca |
45114075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 278 - 345
Target Start/End: Complemental strand, 45122604 - 45122537
Alignment:
| Q |
278 |
ttcatgtctcaattttcttggaccacaaaccataactccaacatctttgtctttacactcaaacagaa |
345 |
Q |
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| T |
45122604 |
ttcatgtctcaattatcttggacaacaaaccataacttcaacatctttgccttcacactcaaaaagaa |
45122537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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