View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5920-Insertion-13 (Length: 360)

Name: NF5920-Insertion-13
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5920-Insertion-13
NF5920-Insertion-13
[»] chr4 (3 HSPs)
chr4 (9-244)||(2878982-2879217)
chr4 (11-163)||(2895769-2895921)
chr4 (11-153)||(2888452-2888594)
[»] chr2 (4 HSPs)
chr2 (77-149)||(44232518-44232590)
chr2 (77-149)||(44209486-44209558)
chr2 (9-149)||(44221700-44221840)
chr2 (74-129)||(43455647-43455702)
[»] chr8 (1 HSPs)
chr8 (54-118)||(4502991-4503055)
[»] chr7 (6 HSPs)
chr7 (72-120)||(39536651-39536699)
chr7 (62-120)||(39545968-39546026)
chr7 (71-120)||(1083275-1083324)
chr7 (71-120)||(39340177-39340226)
chr7 (73-121)||(39354999-39355047)
chr7 (53-120)||(39562774-39562841)
[»] chr1 (2 HSPs)
chr1 (50-149)||(2159232-2159331)
chr1 (50-120)||(2147390-2147460)
[»] chr3 (1 HSPs)
chr3 (27-117)||(49774633-49774723)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 2878982 - 2879217
Alignment:
Q  9 caatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2878982 caatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgc 2879081  T
Q  109 tggaatgtattctgccttaccctatgcactcgcacaggtaataaaatcactatttcacacacaagataaatgtatttgcactatgctttatttacatact 208  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2879082 tggaatgtattctgccttaccctatgcacttgcacaggtaataaaatcactatttcacacacaagataaatgtatttgcactatgctttatttacatact 2879181  T
Q  209 catgttaatctaacttgctctcttttgtcacaggtt 244  Q
    ||||||||||||||||||||||||||||||||||||    
T  2879182 catgttaatctaacttgctctcttttgtcacaggtt 2879217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 163
Target Start/End: Complemental strand, 2895921 - 2895769
Alignment:
Q  11 atgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctg 110  Q
    ||||| ||||||||| ||||| |||||||||| |||||| | || |||||||| || ||||||||||||||| |||| || |||||||||||||||||||    
T  2895921 atgtatactgctgttctcttccttggggtccagaattcatcgtctgtacaacccgtggtagctgttgaaagatctgtcttctatagagaaagagctgctg 2895822  T
Q  111 gaatgtattctgccttaccctatgcactcgcacaggtaataaaatcactattt 163  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||||    
T  2895821 gaatgtattctgccttaccctatgcatttgcacaggtaataaaatcaccattt 2895769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 2888452 - 2888594
Alignment:
Q  11 atgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctg 110  Q
    ||||| ||||||||| ||||| |||||||||| |||||| |  | ||||||||||| ||||| ||||||||| |||| || |||||||||||||||||||    
T  2888452 atgtatactgctgttctcttccttggggtccagaattcatcagctgtacaaccagtggtagcagttgaaagatctgtgttctatagagaaagagctgctg 2888551  T
Q  111 gaatgtattctgccttaccctatgcactcgcacaggtaataaa 153  Q
    | ||||||||||||||||| |||||| | ||||||||||||||    
T  2888552 ggatgtattctgccttaccttatgcatttgcacaggtaataaa 2888594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 44232590 - 44232518
Alignment:
Q  77 gaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgcactcgcacaggtaa 149  Q
    ||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |  |||||||||    
T  44232590 gaaagaactgtattttatagagaaaaagctgctggaatgtactctgccttaccctatgcattttcacaggtaa 44232518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 44209558 - 44209486
Alignment:
Q  77 gaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgcactcgcacaggtaa 149  Q
    ||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||| |  |||||||||    
T  44209558 gaaagaactgtatttaatagagaaaaagctgctggaatgtactctgccttaccctatgcattttcacaggtaa 44209486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 44221840 - 44221700
Alignment:
Q  9 caatgtacactgctgttttcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgc 108  Q
    ||||||| || |||||| ||||| |||| || ||||||||  | || || || || || || || |||||||| ||||| |||||| ||||||  |||||    
T  44221840 caatgtataccgctgttctcttccttggagtacaaaattcttcttctgtgcagccggtggttgcagttgaaaggactgtattttatcgagaaaaggctgc 44221741  T
Q  109 tggaatgtattctgccttaccctatgcactcgcacaggtaa 149  Q
    ||||||||||||||||||||| |||||| |  |||||||||    
T  44221740 tggaatgtattctgccttaccatatgcattttcacaggtaa 44221700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 43455702 - 43455647
Alignment:
Q  74 gttgaaagaactgttttttatagagaaagagctgctggaatgtattctgccttacc 129  Q
    |||||||||||||| || ||| |||||||||||||||||||||||||||| |||||    
T  43455702 gttgaaagaactgtattctatcgagaaagagctgctggaatgtattctgctttacc 43455647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 4502991 - 4503055
Alignment:
Q  54 cagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtat 118  Q
    |||| |||||||| |||||  |||||||||| || || |||||||||||||||||||||||||||    
T  4502991 cagttcaaccagttgtagccattgaaagaacagtgttctatagagaaagagctgctggaatgtat 4503055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 39536699 - 39536651
Alignment:
Q  72 ctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 120  Q
    ||||||||||||| || ||||||||||||||||| ||||||||||||||    
T  39536699 ctgttgaaagaacagtcttttatagagaaagagcggctggaatgtattc 39536651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Complemental strand, 39546026 - 39545968
Alignment:
Q  62 ccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 120  Q
    ||||| ||||||||||||||||| || |||||| |||||||||| || |||||||||||    
T  39546026 ccagtggtagctgttgaaagaacggtcttttatcgagaaagagcagccggaatgtattc 39545968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 1083324 - 1083275
Alignment:
Q  71 gctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 120  Q
    |||||||||||||| || ||||||||||||||||| || |||||||||||    
T  1083324 gctgttgaaagaaccgtcttttatagagaaagagcagccggaatgtattc 1083275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 39340177 - 39340226
Alignment:
Q  71 gctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 120  Q
    |||||||||||||| || ||||||||||||||||| || |||||||||||    
T  39340177 gctgttgaaagaacggtcttttatagagaaagagcggccggaatgtattc 39340226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 39354999 - 39355047
Alignment:
Q  73 tgttgaaagaactgttttttatagagaaagagctgctggaatgtattct 121  Q
    |||||||||||| || ||||||||||||||||| || ||||||||||||    
T  39354999 tgttgaaagaacggtcttttatagagaaagagcagccggaatgtattct 39355047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 39562841 - 39562774
Alignment:
Q  53 tcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 120  Q
    ||||| || ||||| || ||||| |||||||| || ||||||||||||||||| || |||||||||||    
T  39562841 tcagtgcagccagtggttgctgtcgaaagaacggtcttttatagagaaagagcagccggaatgtattc 39562774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 2159331 - 2159232
Alignment:
Q  50 gcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattctgccttaccctatgcactcgcacaggtaa 149  Q
    |||||||| || || ||| |||| ||||| ||||| || || || |||||||||||||||||||||||||| || || || ||||||   ||||||||||    
T  2159331 gcctcagtgcagcctgtaatagcagttgagagaacagtcttctacagagaaagagctgctggaatgtattccgctttgccttatgcagcagcacaggtaa 2159232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 2147460 - 2147390
Alignment:
Q  50 gcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgtattc 120  Q
    ||||| ||||||||| |||||||  |||| ||||| || || || |||||||||||||| |||||||||||    
T  2147460 gcctcggtacaaccaatagtagcaattgagagaacagtcttctacagagaaagagctgcaggaatgtattc 2147390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 49774633 - 49774723
Alignment:
Q  27 tcttcattggggtccaaaattcagcctcagtacaaccagtagtagctgttgaaagaactgttttttatagagaaagagctgctggaatgta 117  Q
    ||||||||||||| |||||| |  | || || |||||||| |||||  |||| ||||| ||||| ||||||||||  ||||||||||||||    
T  49774633 tcttcattggggtacaaaatgctacatcggtgcaaccagttgtagccattgagagaacagttttctatagagaaaaggctgctggaatgta 49774723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University