View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920-Insertion-2 (Length: 1005)
Name: NF5920-Insertion-2
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 360 - 859
Target Start/End: Original strand, 35213188 - 35213675
Alignment:
| Q |
360 |
ggaaagattgagaacgagaaaccaaggagaaaaatctgcgtgctgccatgatagaaaaagattgttaccaacttaggctcagtggcattgttttgttcta |
459 |
Q |
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| T |
35213188 |
ggaaagattgagaacgagaaaccaaggagaaaaatctgcgtgctgccatgatagaaaaagattgttaccaacttaggctcagtggcattgttttgttcta |
35213287 |
T |
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| Q |
460 |
cttagtataaataattaagtattagtacaatatttttattttatttcaaaagaatgctgaatcatgcatgtttcctataaacaaaacaacaaaagtcata |
559 |
Q |
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| T |
35213288 |
cttagtataaataa----gtattagtacaatatttttattttatttcaaaagaatgctgaatcatgcatgtttcccataaacaaaacaacaaaagtcata |
35213383 |
T |
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| Q |
560 |
gtttggtttcttcgtgtcatcctcctttaattttatgtctccacacgttgcaattttagctgttcaccaaagctatagaagtagagaaccaaagctagtt |
659 |
Q |
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| T |
35213384 |
gtttggtttcttcgtgtcatcctcctttaattttatgtctccacacgttgcaattttagcaattcaccaaagctatagaagtagagaaccaaagctagtt |
35213483 |
T |
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| Q |
660 |
gtaacacatggctaaattttagacttcctttnnnnnnntatgagcgagttattcgcatatcagttaaaatcactccagacaagagtactccatttacatt |
759 |
Q |
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| T |
35213484 |
gtaacacatggctaaattttagacttcctttaaaaaaatatgagcgagttattcacatatcagttaaaatcactccagacaagagtactccatttacatt |
35213583 |
T |
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| Q |
760 |
ttccttatagaatcatatgtttgatatagactcgtgacttagaccttacctaacttataaaataacttaccagcgtatttttccgacattacccgctgag |
859 |
Q |
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| T |
35213584 |
ttccttatagaatgatatgtttgatatagactcgtgacttagaccttacct--------aattaacttactagcgtatttttccgacattacccgctgag |
35213675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 35212804 - 35213155
Alignment:
| Q |
9 |
acttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataataaattgtcacaactacactccactatgtataacattagaggtatt |
108 |
Q |
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| T |
35212804 |
acttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataataaattgtcacaactacactccactatgcataacattagaggtatt |
35212903 |
T |
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| Q |
109 |
agtatactattaaatcacatgaacctgatgcagcatccacaaatttcccattaatgagattctttgtgtatcttatttccacagatggtgtgattaattc |
208 |
Q |
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| T |
35212904 |
agtatactattaaatcacatgaacctgatgcagcatccataaatttcccattaatgagattctttgtgtatcttatttccacagatggtgtgattaattc |
35213003 |
T |
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| Q |
209 |
atcaacttcagcagcagtgctcaacttgcttatgtttctactcctttgagtgtctcttccttcatgnnnnnnnggggagggttgttaattatttgtctaa |
308 |
Q |
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| T |
35213004 |
atcaacttcagcagcagtgctcaacttgcttatgtttctactcctttgagtgtctcttccttcatgaaaaaaaagggagggttgttaattatttgtctaa |
35213103 |
T |
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| Q |
309 |
taatggattaaccataggtgattagtgataattttctgtcacctaatgtatg |
360 |
Q |
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| T |
35213104 |
taatggattaaccataggtgattagtgataattttctgtcacctaatgtatg |
35213155 |
T |
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