View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5920-Insertion-3 (Length: 850)
Name: NF5920-Insertion-3
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920-Insertion-3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 685; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 685; E-Value: 0
Query Start/End: Original strand, 7 - 762
Target Start/End: Original strand, 27667580 - 27668336
Alignment:
| Q |
7 |
cacatacaacataaacacctgtatgattcagttaaatacaaatcaagggagtcttctgaacnnnnnnnnactagcaggtatgtttgggatactacactgg |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
27667580 |
cacatacaacataaacacctgtatgatacagttaaatacaaatcaagggagtcttctgaacttttttctaccagcaggtatgtttgggatactacactgg |
27667679 |
T |
|
| Q |
107 |
taagatttacctt-ggctagatactgttgtcatataaaatacagtgccttgatttttcaaaattaaaatgactgtcataatatagcccaatacttaatat |
205 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27667680 |
taagatttaccttcggctagatactgttgtcatataaaatacagtgccttgatttttcaaaattaaaatgactgtcataatatagcccaatacttaatat |
27667779 |
T |
|
| Q |
206 |
gacctttccatgacatgtttatataggaaatgatatatttggccacatatgtagagggttcgttgagaattgagatgctcatagccaggtcttccttgca |
305 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27667780 |
gacccttccatgacatgtttatataggaaatgatatatttggccacatatgtagagggttcgttgagaattgagatgctcatagccaggtcttccttgca |
27667879 |
T |
|
| Q |
306 |
atttttcttccttaagattggaaattaataataatctcagttgatatcacaggtataattaataatctcagttgatatcacaggtataattaaagtatac |
405 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27667880 |
atttttcttccttaagattgaaaattaataataatctcagttgatatcacaggtataattaataatctcagttgatatcacaggtataattaaagtatac |
27667979 |
T |
|
| Q |
406 |
aaatcagtagcgaaatgaaccacatctttgaggcactttgcaatattggaccaggaaagttacgtttttcttcattaccttgtctgctcttttatcgatc |
505 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27667980 |
aaatcagtagtgaaataaaccacatctttgaggcactttgcaatattggaccaggaaagttacgtttttcttcattaccttgtctgctcttttatcgatc |
27668079 |
T |
|
| Q |
506 |
atttgcctctaatatacaagcagcaattggcaacccgtactaacttctattcgtttttcaaagaaacgtgagctgagtttaaccacatgtgtcaacctag |
605 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27668080 |
atttgcctctaatatacaagcggcaattggcaacccgtactaacttctattcgtttttcaaagaaacgtgagctgagtttaaccacatgtgtcaacctag |
27668179 |
T |
|
| Q |
606 |
ttaccaacattttaactaatatcctgaaaaagctaataactaaaaaaggaatatactacaaataactgatgttacagaatttaatatcattaacctcatt |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
27668180 |
ttaccaacattttaactaatatcctgaaaaagctaataactaaaaaaggaatatactacaaataactgatgttacagaatttaatgtcattaacctcagt |
27668279 |
T |
|
| Q |
706 |
ttatataaccaaaactccacaaagatttgtgacacttttacattgataattggtcta |
762 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27668280 |
ttatataaccaaaactccacaaagatttgtgacacttttacaatgataattggtcta |
27668336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 27672931 - 27673010
Alignment:
| Q |
274 |
attgagatgctcatagccaggtcttccttgcaatttttcttccttaagattg-gaaattaataataatctcagttgatat |
352 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||||| |||||||| |||||| |||| ||||||||||||||||||||| |
|
|
| T |
27672931 |
attgagatgctcatagcctggtcttcctcgtaatttgtcttccttgagattgaaaaatcaataataatctcagttgatat |
27673010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University