View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920-Insertion-6 (Length: 580)
Name: NF5920-Insertion-6
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920-Insertion-6 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 245 - 546
Target Start/End: Original strand, 13978946 - 13979246
Alignment:
| Q |
245 |
ctaaatatcttggtgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttggtatgttcctttcacaacaactcggagttc |
344 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
13978946 |
ctaaatatcttgctgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttggaatgttcctttcccaacaactcggagttc |
13979045 |
T |
|
| Q |
345 |
taaggccccaatagtgttggccttgcgcgaaaaactgtaggatggatcagtgaaagacttatccaaacaattgcaacatttactcaacaattcttcactt |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13979046 |
taaggccccaatagtgttggccttgcgcgaaaaactgtaggatggatcagtgaaagacttatccaaacaattgcaacatttactcaacaattcttcactt |
13979145 |
T |
|
| Q |
445 |
gcttcaccactaatttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaatttcttcttctgct |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
13979146 |
gcttcaccactaatttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaa-ttcctcttctgct |
13979244 |
T |
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| Q |
545 |
aa |
546 |
Q |
| |
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|| |
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| T |
13979245 |
aa |
13979246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 13976992 - 13977059
Alignment:
| Q |
156 |
catgatcatagaaaattacactcaatttaaaaaatgatacacccatgttccatctaaaaaacactcaa |
223 |
Q |
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| T |
13976992 |
catgatcatagaaaattacactcaatttaaaaaatgatacacccatgttccatctaaaaaacactcaa |
13977059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 535
Target Start/End: Original strand, 10263672 - 10263768
Alignment:
| Q |
439 |
tcacttgcttcaccactaatttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaatttct |
535 |
Q |
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| T |
10263672 |
tcacttgcttcaccgctgatttcccagaagataacatagtgtcctgggtcattggataaatcaatgtagctagtgtagtcaatcacttccattttct |
10263768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 502
Target Start/End: Original strand, 10241659 - 10241764
Alignment:
| Q |
397 |
aaagacttatccaaacaattgcaacatttactcaacaattcttcacttgcttcaccactaatttcccagaatattacatagtttccaggctcattagata |
496 |
Q |
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||||||||||||||||| | ||||||| || | || ||| ||||||||||||||||| |||||||| || || ||||| | ||| || || || |||| |
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| T |
10241659 |
aaagacttatccaaacatgtacaacattcaccaagcacttcatcacttgcttcaccactgatttcccaaaaaataacataatgtcctggttctttggata |
10241758 |
T |
|
| Q |
497 |
aatcaa |
502 |
Q |
| |
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|||||| |
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|
| T |
10241759 |
aatcaa |
10241764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 251 - 546
Target Start/End: Original strand, 18044704 - 18045003
Alignment:
| Q |
251 |
atcttggtgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttggtatgttcctttcacaacaactcggagttctaaggc |
350 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
18044704 |
atcttggtgtgttatactgactaacagatgttcctaatcccaagtaatgatcaagaatcttttgaaatgttcctttcctaacaactcggagttctaaggc |
18044803 |
T |
|
| Q |
351 |
cccaatagtgttggccttgcgcgaaaaactgtaggatggatcagtgaaagacttatccaaacaattgcaacatt-----tactcaacaattcttcacttg |
445 |
Q |
| |
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||| ||||||||| || || ||| | |||| || ||| ||||||||||||||||||| |||||||||| || |||||| || ||| |||| |
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| T |
18044804 |
cccgatagtgttgaatttacgagaactagtgtatcctgcatcgatgaaagacttatccaaacagttgcaacattcaatataatcaacacttgttcgcttg |
18044903 |
T |
|
| Q |
446 |
cttcaccactaatttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaatttcttcttctgcta |
545 |
Q |
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|||| || | |||||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
18044904 |
cttccccgttgatttcccagaatattacatagtgcccgggctctttagataaatcgacatggcttgtgaattcaacgacttccagtttc-tcttctgcta |
18045002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 251 - 535
Target Start/End: Complemental strand, 48369932 - 48369648
Alignment:
| Q |
251 |
atcttggtgtcttatactgactaatagatgttcctaatcccaagtaatgatcaagaatcttttggtatgttcctttcacaacaactcggagttctaaggc |
350 |
Q |
| |
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|||||||||| ||||||||||||| || |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| |
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| T |
48369932 |
atcttggtgttttatactgactaacagctgttcctaatccaaggtaatgatcaagaatcttttgaaatgttcctttcctaacaactcgaagttctaaggc |
48369833 |
T |
|
| Q |
351 |
cccaatagtgttggccttgcgcgaaaaactgtaggatggatcagtgaaagacttatccaaacaattgcaacatttactcaacaattcttcacttgcttca |
450 |
Q |
| |
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||||||| |||| | || || ||| | ||||| || ||| |||||||| |||||||| |||||||||| | | || ||||||||||||||| |
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| T |
48369832 |
tccaatagcgttgactttacgagaactagtgtagcctgcatcgacaaaagacttgtccaaacagttgcaacattcatgaagcacttcttcacttgcttcc |
48369733 |
T |
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| Q |
451 |
ccactaatttcccagaatattacatagtttccaggctcattagataaatcaacatggcttgtgaattcaataacttccaatttct |
535 |
Q |
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|| | ||||||||||| ||||||||||| || ||||| || ||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
48369732 |
ccgttgatttcccagaagattacatagttccctggctctttggataaatcaacatggcttgtgaactcaacaacttccaatttct |
48369648 |
T |
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