View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5920-Insertion-9 (Length: 472)

Name: NF5920-Insertion-9
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5920-Insertion-9
NF5920-Insertion-9
[»] chr5 (1 HSPs)
chr5 (9-472)||(4628861-4629327)


Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 9 - 472
Target Start/End: Complemental strand, 4629327 - 4628861
Alignment:
Q  9 cctaagataataatacaagcacattacaaaatttatgcatgcaggtcccacgaatctgcannnnnnn--ggcaaattgacgctttatcaaatgcaggttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||         ||  |||||||||||||||||||||||||||    
T  4629327 cctaagataataatacaagcacattacaaaatttatgcatgcaggtcccacgaatatgcatttttttttggtgaattgacgctttatcaaatgcaggttt 4629228  T
Q  107 acacaattgccccatgcagctgcaaaggtaaacaacaggaggatatccgacattctcttctcacccaaacttttctacacgtacaatgatttatttattt 206  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4629227 acacgattgccccatgcagctgcaaatgtaaacaacaggaggatatcctacattctcttctcacccaaacttttctacacatacaatgatttatttattt 4629128  T
Q  207 ttgataaattctagacatacaatgttaaactacgtttcagccatcataatttgcacggaacacgggttactattcaaagaagtttcagtatcaaaaatgt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4629127 ttgataaattctagacatacaatgttaaactacgtttcagccatcataatttgcacggaacacgggttactattcaaagaagtttcagtatcaaaaatgt 4629028  T
Q  307 ggctccatgggctctgcaacaaattgacagaacaacaaatgagattg-nnnnnnnnattagatcaacaaatcaattttaatgcatcagaaaacaagcata 405  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  4629027 ggctccatgggctctgcaacaaattgacagaacaacaaatcagattgtttttttttattagatcaacaaatcaattttaatgcatcagaaaacaagcata 4628928  T
Q  406 atagcatatgccaataacataacattactgacctgctttcattgtagggcgttgttgactatttagt 472  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4628927 atagcatatgccagtaacataacattactgacctgctttcattgtagggcgttgttgactatttagt 4628861  T

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