View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5920_high_11 (Length: 319)

Name: NF5920_high_11
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5920_high_11
NF5920_high_11
[»] chr1 (1 HSPs)
chr1 (10-303)||(50666291-50666584)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 303
Target Start/End: Original strand, 50666291 - 50666584
Alignment:
Q  10 gatgaatctgttgtgaatcgtgaattacgaattggtgtttagggttttaaaccttctttagatactttgatgaaattaaaccctcaatcacactaattat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50666291 gatgaatctgttgtgaatcgtgaattacgaattggtgtttagggttttaaaccttctttagatactttgatgaaattaaaccctcaatcacactaattat 50666390  T
Q  110 tcaaatcttcacggtttaggggattagggtttaaaacctttgaataaattgctttgtttttagggattttgagaaattgaccttgttttgatataattct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50666391 tcaaatcttcacggtttaggggattagggtttaaaacctttgaataaattgctttgtttttagggattttgagaaattgaccttgttttgatataattct 50666490  T
Q  210 ctaaacagaagttgctacgatgaaaaatacagagagcaaagatagagagtctcatgagacgaccaacatgtttggacatactgcgagcacaaac 303  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50666491 ctaaacagaagttgctacgatgaaaaatatagagagcaaagatagagagtctcatgagacgaccaacatgtttggacatactgcgagcacaaac 50666584  T

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