View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5920_high_13 (Length: 311)
Name: NF5920_high_13
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 281
Target Start/End: Complemental strand, 46130773 - 46130504
Alignment:
| Q |
11 |
agaatatcagtgctactgaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttcc |
110 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46130773 |
agaatatcagtgctaccgaaaaacgacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttcc |
46130674 |
T |
|
| Q |
111 |
ctcaaggatagcttgaaccattttgcctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46130673 |
ctcaaggatagcttgaaccattttgcctgaaccatcccgagtaatccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataag |
46130574 |
T |
|
| Q |
211 |
agttcccgaaggccaggcaatgctggtaagatctgaaaaggataacaaaaccatttctaaattcattatat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46130573 |
agttcccgaaggccaggcaatgctggtaagatctgaaaa-aataacaaaaccatttctaaattcattatat |
46130504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 46703588 - 46703342
Alignment:
| Q |
11 |
agaatatcagtgctactgaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttcc |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
46703588 |
agaatatcagtgctaccgaaaaaagacacaaatatattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgtgggcaaaaatttcc |
46703489 |
T |
|
| Q |
111 |
ctcaaggatagcttgaaccattttgcctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataag |
210 |
Q |
| |
|
||||| ||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
46703488 |
ctcaacgatagcttgaaccatttcgtctgaacaatcctgagtaagccagtagagaatagagcatgcatatagttgaactgattcatcaggcatcaataag |
46703389 |
T |
|
| Q |
211 |
agttcccgaaggccaggcaatgctggtaagatctgaaaaggataaca |
257 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
46703388 |
agttcccgaaggccagacaatgctggtaagatctgaaaaggataaca |
46703342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 46124791 - 46124551
Alignment:
| Q |
11 |
agaatatcagtgctactgaaaaaagacacaaata-tattgtaatcactaatcagtcaaggacttacagtagtaactctacaagtcgcgggcaaaaatttc |
109 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
46124791 |
agaatatcagtgctaccgaaaaaagacacaaaaggtattgtaatcaat-------caaggacttacagtagtaactctacaagtcgtgggcaaaattttg |
46124699 |
T |
|
| Q |
110 |
cctcaaggatagcttgaaccattttgcctgaaccatcctgagtaagccagtagagaatagagcatgcatatagtaaaactaattcatcaggcatcaataa |
209 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| | |||||||| |||| |||| | | |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
46124698 |
cctcaacgatagcttgaaccattttgtctgaacctttctgagtaaaccaggagaggagatggcatgcatatagtataacttcttcatcaggcatcaataa |
46124599 |
T |
|
| Q |
210 |
gagttcccgaaggccaggcaatgctggtaagatctgaaaaggataaca |
257 |
Q |
| |
|
||| ||| ||||||||| ||||||||||| ||||||||| ||||||| |
|
|
| T |
46124598 |
gagctcctgaaggccagacaatgctggtagcatctgaaaaagataaca |
46124551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University