View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_high_15 (Length: 262)
Name: NF5920_high_15
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 16703395 - 16703636
Alignment:
| Q |
13 |
aaaatcaaatctcttcagaatataatctaggaaaactctggctcgccgaatcataagcattcccaaagtcccccttgaaagtgaggcaatccttcttaaa |
112 |
Q |
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| T |
16703395 |
aaaatcaaatctcttcagcatataatctaggaaaactctggctcgccgaatcataagcattcccaaagtccaccttgaaagtgaggcaatccttcttaga |
16703494 |
T |
|
| Q |
113 |
tcatttgactaaacccacaatcttattgaccgacaccactccatccaccaattgtctacctttaaggaaagatgattgattggacgagataattttatcc |
212 |
Q |
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| T |
16703495 |
tcatatgactaaacccacaatcttattgaccgacaccactccatccaccatttgcctacctttaaggaaagatgatagattgaatgagataattttatcc |
16703594 |
T |
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| Q |
213 |
atcgctgaagctaacattgaagccaacactttagcaaccaac |
254 |
Q |
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| T |
16703595 |
atcgctgaagctaagattgaagccaacactttagcaaccaac |
16703636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 183
Target Start/End: Complemental strand, 16573400 - 16573277
Alignment:
| Q |
60 |
gaatcataagcattcccaaagtcccccttgaaagtgaggcaatccttcttaaatcatttgactaaacccacaatcttattgaccgacaccactccatcca |
159 |
Q |
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| T |
16573400 |
gaatcataagctttctcaaaatccactttaaaaatgaggcaatcctgcttagattttttggctaaatccacaacctcattgaccgccagcactccgtcca |
16573301 |
T |
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| Q |
160 |
ccaattgtctacctttaaggaaag |
183 |
Q |
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| T |
16573300 |
ccaattccctacctttaaggaaag |
16573277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 182
Target Start/End: Complemental strand, 5217347 - 5217241
Alignment:
| Q |
76 |
caaagtcccccttgaaagtgaggcaatccttcttaaatcatttgactaaacccacaatcttattgaccgacaccactccatccaccaattgtctaccttt |
175 |
Q |
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|||||||| | || ||| |||||||||||| ||||| | |||| ||| | |||||| || |||||||| ||||||||||||||||||||| | |||||| |
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| T |
5217347 |
caaagtccactttaaaaatgaggcaatcctgcttaagttttttggctatatccacaacctcattgaccgccaccactccatccaccaattgcccaccttt |
5217248 |
T |
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| Q |
176 |
aaggaaa |
182 |
Q |
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||||||| |
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| T |
5217247 |
aaggaaa |
5217241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 2387180 - 2387268
Alignment:
| Q |
127 |
ccacaatcttattgaccgacaccactccatccaccaattgtctacctttaaggaaagatgattgattggacgagataattttatccatc |
215 |
Q |
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| T |
2387180 |
ccacaacctcatttaccgccactactccatccaccaattgcctacctttaaaaaaagttaattgattggacgggatgattttatccatc |
2387268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 30862414 - 30862287
Alignment:
| Q |
127 |
ccacaatcttattgaccgacaccactccatccaccaattgtctacctttaaggaaagatgattgattggacgagataattttatccatcgctgaagctaa |
226 |
Q |
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|||||| || ||||||| |||||||| ||||||||||| ||| ||||||||||||| ||| || || | ||| || |||||||||||| |||||| || |
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| T |
30862414 |
ccacaacctcattgaccaccaccactctatccaccaattatctccctttaaggaaagctgactggtttggcgaaatgattttatccatcactgaagtgaa |
30862315 |
T |
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| Q |
227 |
cattgaagccaacactttagcaaccaac |
254 |
Q |
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| T |
30862314 |
ccttgaagctaaaactttaacaatcaac |
30862287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 12077082 - 12077014
Alignment:
| Q |
147 |
accactccatccaccaattgtctacctttaaggaaagatgattgattggacgagataattttatccatc |
215 |
Q |
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||||||||| |||||||||| ||||||||||| |||| ||| || || |||||||| ||||||||||| |
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| T |
12077082 |
accactccaaccaccaattgcctacctttaagtaaagctgactggttagacgagatggttttatccatc |
12077014 |
T |
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