View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_high_19 (Length: 233)
Name: NF5920_high_19
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 31534315 - 31534537
Alignment:
| Q |
1 |
tttactttaaccactttatgtgttacttgcgcgtaattgtgtgcctacatgacatgtttgttgatgattat---atagtttgttatcaacttctaaaaga |
97 |
Q |
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| T |
31534315 |
tttactttaaccactttatgtgttacttacgcttaattgcgtgcctacatgacatgtttgttgataattatcagatagtttgttatcaacttctaaaaga |
31534414 |
T |
|
| Q |
98 |
gcttaccaatgtagataatgatcgttatttctgattgattgggttggacgatcgttgcaaccaggtcttgcacgctctgacttgtgatggtattgctccg |
197 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |||||||| |||||||| |||||| ||||| |
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| T |
31534415 |
gcttaccagtgtagataatgatcgttatttttgattgattgggttggacaatcgtttcaaccaggtcttacacgctctaacttgtgacggtattactccg |
31534514 |
T |
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| Q |
198 |
gctccatcggataaatggatgat |
220 |
Q |
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||||||| ||||||||||||||| |
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| T |
31534515 |
gctccattggataaatggatgat |
31534537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 21544923 - 21545063
Alignment:
| Q |
80 |
ttatcaacttctaaaagagcttaccaatgtagataatgatcgttatttctgattgattgggttggacgatcgttgcaaccaggtcttgcacgctctgact |
179 |
Q |
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||||||||||||||||||||||| | || ||||| ||| | |||| ||||||||| ||| ||| | | | |||| |||||||||| |||||||| |
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| T |
21544923 |
ttatcaacttctaaaagagcttaacggtgaagatagtgagcattatcggtgattgatttggtcggataaacaattcaacgaggtcttgcatgctctgacc |
21545022 |
T |
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| Q |
180 |
tgtgatggtattgctccggctccatcggataaatggatgat |
220 |
Q |
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| T |
21545023 |
ggtgatggtattggtcgtgctacatcagataaatggatgat |
21545063 |
T |
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