View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_high_20 (Length: 215)
Name: NF5920_high_20
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 38318048 - 38318228
Alignment:
| Q |
15 |
cagagatgacttggatggaataatgaatgaaattgataatggtgaaaaaatggtgcaagtgtgacaatgatggcggtgatgattgatttgcttgtagtta |
114 |
Q |
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| T |
38318048 |
cagagatgacttggatggaataatgaatgaaattgataatggtgaaaaaatggtgcaagcgtgacaatgatggcggtgatgattgatttgcttgtagtta |
38318147 |
T |
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| Q |
115 |
tttaactttgatttatcatgtttgttttgactttatcttttaaattgttaggatatggtctggtctggtggacttaacttt |
195 |
Q |
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| T |
38318148 |
tttaactttgatttatcatgtttgttttgactttatcttttaaattgttaggatatggtctggtctggtggacttaacttt |
38318228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 38326930 - 38326971
Alignment:
| Q |
82 |
tgatggcggtgatgattgatttgcttgtagttatttaacttt |
123 |
Q |
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| T |
38326930 |
tgatggtggtgatgattgatttgcttgtatttatttaacttt |
38326971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 38301485 - 38301553
Alignment:
| Q |
82 |
tgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgtttgttttgactttat |
150 |
Q |
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| T |
38301485 |
tgatggtgatgatgattgatttgcttgtatctatttaactttggtttataatgtgtcttttggctttat |
38301553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 38323024 - 38323075
Alignment:
| Q |
91 |
tgatgattgatttgcttgtagttatttaactttgatttatcatgtttgtttt |
142 |
Q |
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| T |
38323024 |
tgatgattgatttgcttgtatttacttaactttggtttatgatgtttttttt |
38323075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 38849192 - 38849130
Alignment:
| Q |
81 |
atgatggcggtgatgattgatttgcttgtagttatttaactttgatttatcatgtttgttttg |
143 |
Q |
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| T |
38849192 |
atgatgtcgatgatgattgatttgcttgtatttatttaactttggtttatcatgtttattttg |
38849130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 38849263 - 38849223
Alignment:
| Q |
33 |
aataatgaatgaaattgataatggtgaaaaaatggtgcaag |
73 |
Q |
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| T |
38849263 |
aataaagaatgaaattgataatgatgaaaaaatggagcaag |
38849223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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