View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_high_3 (Length: 498)
Name: NF5920_high_3
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 480
Target Start/End: Original strand, 4628855 - 4629327
Alignment:
| Q |
11 |
cacagaactaaatagtcaacaacgccctacaatgaaagcaggtcagtaatgttatgttattggcatatgctattatgcttgttttctgatgcattaaaat |
110 |
Q |
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| T |
4628855 |
cacagaactaaatagtcaacaacgccctacaatgaaagcaggtcagtaatgttatgttactggcatatgctattatgcttgttttctgatgcattaaaat |
4628954 |
T |
|
| Q |
111 |
tgatttgttgatctaatnnnnnnnn-caatctcatttgttgttctgtcaatttgttgcagagcccatggagccacatttttgatactgaaacttctttga |
209 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4628955 |
tgatttgttgatctaataaaaaaaaacaatctgatttgttgttctgtcaatttgttgcagagcccatggagccacatttttgatactgaaacttctttga |
4629054 |
T |
|
| Q |
210 |
atagtaacccgtgttccgtgcaaattatgatggcttaaacgtagtttaacattgtatgtctagaatttatcaaaaataaataaatcattgtacgtgtaga |
309 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4629055 |
atagtaacccgtgttccgtgcaaattatgatggctgaaacgtagtttaacattgtatgtctagaatttatcaaaaataaataaatcattgtatgtgtaga |
4629154 |
T |
|
| Q |
310 |
aaagtttgggtgagaagagaatgtcggatatcctcctgttgtttacctttgcagctgcatggggcaattgtgtaaacctgcatttgataaagcgtcaatt |
409 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
4629155 |
aaagtttgggtgagaagagaatgtaggatatcctcctgttgtttacatttgcagctgcatggggcaatcgtgtaaacctgcatttgataaagcgtcaatt |
4629254 |
T |
|
| Q |
410 |
tgcc--nnnnnnntgcagattcgtgggacctgcatgcataaattttgtaatgtgcttgtattattatcttagg |
480 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4629255 |
caccaaaaaaaaatgcatattcgtgggacctgcatgcataaattttgtaatgtgcttgtattattatcttagg |
4629327 |
T |
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