View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_high_5 (Length: 413)
Name: NF5920_high_5
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 396
Target Start/End: Original strand, 45098570 - 45098948
Alignment:
| Q |
13 |
aatattatgagaggaataaaagtaccaagtccataatctctattagaaaatttcaatctcatccacttaatgataatttggattccaatcatgtgctccc |
112 |
Q |
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| T |
45098570 |
aatattatgagaggaataaaagtaccaagtccataatctctattagaaaatttcaatctcatccacttaatgataatttggattccaatcatgtgctccc |
45098669 |
T |
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| Q |
113 |
tgaagtagaggccattggcatagaatcagagaaggaattattacttattaaaatcaactgtgagaaacgtgaaggcattttgttcaaactattgtctatg |
212 |
Q |
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| T |
45098670 |
tgaagtagaggccattggcatagaatcagagaaggaattattacttattaaaatcaactgtgagaaacgtgaaggcattttgttcaaactattgtctatg |
45098769 |
T |
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| Q |
213 |
ctggaaaatatgcacctctatgtttccaccagtagtgtgcttccatttgggaaaaataccctcaacattaccatcattgctaaggtaatgnnnnnnnnnn |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45098770 |
ctggaaaatatgcacctctatgtttccaccagtagtgtgcttccatttgggaaaaataccctcaacattaccatcattgctaaggtaatg-----ttttt |
45098864 |
T |
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| Q |
313 |
nnnnnnngtttcaattatgaatacttgtttgaaattttgaagcattgataaaatgttaattacatggattttatgtggcagatg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45098865 |
tttttttgtttcaattatgaatacttgtttgaaattttgaagcattgataaaatgttaattacatggattttatgtggcagatg |
45098948 |
T |
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