View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_low_14 (Length: 304)
Name: NF5920_low_14
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 288
Target Start/End: Original strand, 9857488 - 9857768
Alignment:
| Q |
8 |
gagatgaagagaacctttgtttggaagaggatgaagaggaaattgaggttggggaggaagataatgggttggctcttcctattacaagtgctattgaaag |
107 |
Q |
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| T |
9857488 |
gagatgaagagaacctttgtttggaagaggataaagaggaaattgaggttggggaggaagataatgggttggctcttcctattacaagtgctattgaaag |
9857587 |
T |
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| Q |
108 |
tgaaacttatgaagaattagattatgaagtttattttgaagatgattaccgaggatatcaatggaacaatggtttggatgaatttgaagatgaagaggaa |
207 |
Q |
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| T |
9857588 |
tgaaacttatgaagaattagattatgaagtttattttgaagatgattaccgaggatatcaatggaacaatggtttggatgaatttgaagatgaagaggaa |
9857687 |
T |
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| Q |
208 |
atggaggttgaagaagatgatgagtatgaagtttattgtgaagatgattacggaggatatcaatgggaagaagttgaagag |
288 |
Q |
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| T |
9857688 |
atggaggttgaagaagatgatgagtatgaagtttattgtgaagatgattacggaggatatcaatgggaagaagttgaagag |
9857768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 223
Target Start/End: Original strand, 9857797 - 9857892
Alignment:
| Q |
128 |
attatgaagtttattttgaagatgattaccgaggatatcaatggaacaatggtttggatgaatttgaagatgaagaggaaatggaggttgaagaag |
223 |
Q |
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| T |
9857797 |
attatgaagttaattatgaagatgattacggaggatatcaatggaacgttggtttggaagaatatgaagatgaagaggaaatggaggttgaagaag |
9857892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 273
Target Start/End: Original strand, 9857757 - 9857840
Alignment:
| Q |
193 |
gaagatgaagaggaaatggaggttgaag---aagatgatgagtatgaagtttattgtgaagatgattacggaggatatcaatgg |
273 |
Q |
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| T |
9857757 |
gaagttgaagaggaaatggaggttgaagaagaagatgattattatgaagttaattatgaagatgattacggaggatatcaatgg |
9857840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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