View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_low_16 (Length: 261)
Name: NF5920_low_16
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 35212804 - 35213037
Alignment:
| Q |
18 |
acttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataataaattgtcacaactacactccactatgtataacattagaggtatt |
117 |
Q |
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| T |
35212804 |
acttccccagttcttgggtcataagcaggaaaagtttttcctattcaccaataataaattgtcacaactacactccactatgcataacattagaggtatt |
35212903 |
T |
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| Q |
118 |
agtatactattaaatcacatgaacctgatgcagcatccacaaatttcccattaatgagattctttgtgtatcttatttccacagatggtgtgattaattc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35212904 |
agtatactattaaatcacatgaacctgatgcagcatccataaatttcccattaatgagattctttgtgtatcttatttccacagatggtgtgattaattc |
35213003 |
T |
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| Q |
218 |
atcaacttcagcagcagtgctcaacttgcctatg |
251 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
35213004 |
atcaacttcagcagcagtgctcaacttgcttatg |
35213037 |
T |
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