View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5920_low_17 (Length: 248)
Name: NF5920_low_17
Description: NF5920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5920_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 37525967 - 37525745
Alignment:
| Q |
10 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37525967 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctct |
37525868 |
T |
|
| Q |
110 |
accaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37525867 |
accaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
37525768 |
T |
|
| Q |
210 |
tggttttagtaattcaaccttgt |
232 |
Q |
| |
|
|||||||||||| |||||||||| |
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|
| T |
37525767 |
tggttttagtaactcaaccttgt |
37525745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 37588128 - 37587910
Alignment:
| Q |
10 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588128 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
37588029 |
T |
|
| Q |
110 |
accaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588028 |
accaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
37587929 |
T |
|
| Q |
210 |
tggttttagtaattcaacc |
228 |
Q |
| |
|
|||||||||||| |||||| |
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| T |
37587928 |
tggttttagtaactcaacc |
37587910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 37618702 - 37618480
Alignment:
| Q |
10 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
37618702 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttgcatgcaacatatctatgctcc |
37618603 |
T |
|
| Q |
110 |
accaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37618602 |
accaagtcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacatttgccaataaaaggcaaaggaactctctaggattt |
37618503 |
T |
|
| Q |
210 |
tggttttagtaattcaaccttgt |
232 |
Q |
| |
|
|||||||||||| |||||||||| |
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|
| T |
37618502 |
tggttttagtaactcaaccttgt |
37618480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 37690404 - 37690182
Alignment:
| Q |
10 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37690404 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
37690305 |
T |
|
| Q |
110 |
accaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
37690304 |
accaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggcaacgaaactctctaggattc |
37690205 |
T |
|
| Q |
210 |
tggttttagtaattcaaccttgt |
232 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
37690204 |
tggttttagtaactcaaccttgt |
37690182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 37794470 - 37794248
Alignment:
| Q |
10 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
37794470 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttgcatgcaacatatctatgctcc |
37794371 |
T |
|
| Q |
110 |
accaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37794370 |
accaagtcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacatttgccaataaaaggcaaaggaactctctaggattt |
37794271 |
T |
|
| Q |
210 |
tggttttagtaattcaaccttgt |
232 |
Q |
| |
|
|||||||||||| |||||||||| |
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| T |
37794270 |
tggttttagtaactcaaccttgt |
37794248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 170
Target Start/End: Complemental strand, 37787718 - 37787563
Alignment:
| Q |
15 |
actcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctccaccaa |
114 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||| |||| || |
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|
| T |
37787718 |
actctcgaattgcatgcctcatgtaacttagcttcttctcttcagcccattgagcatttaaaccatgaagcttgcaggcgacatatccatgatccagtaa |
37787619 |
T |
|
| Q |
115 |
gtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttattt |
170 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||| ||||| |||||| ||||||| |
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|
| T |
37787618 |
gtcaaaagcctgctagaaatttcttactttaaattactgcagaaaggtgtttattt |
37787563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 14548490 - 14548268
Alignment:
| Q |
10 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14548490 |
attatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgcaacatatctatgctct |
14548391 |
T |
|
| Q |
110 |
accaagtcaaaagcctgctggaaattttttacttcaaatcgctgcaaaaaggtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
209 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14548390 |
accaattcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacatttgccaataaaaggcaaaggaactctctaggattc |
14548291 |
T |
|
| Q |
210 |
tggttttagtaattcaaccttgt |
232 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
14548290 |
tggttttagtaattcaaccttgt |
14548268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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