View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921-Insertion-11 (Length: 380)
Name: NF5921-Insertion-11
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921-Insertion-11 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 73 - 274
Target Start/End: Original strand, 1780458 - 1780659
Alignment:
| Q |
73 |
ctcacggaacacgtctatttcgtttattacatcaaaaattggaaaacaagaaaaagagtaaaataaagagagtagatggaatgccacgttatacaaaagg |
172 |
Q |
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| T |
1780458 |
ctcacggaacacatctatttcgtttattacatcaaaaattggaaaacaagaaaaagagtaaaataaagagagtagatggaatgccacgttatacaaaagg |
1780557 |
T |
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| Q |
173 |
ggtaggtagggcccacagtccacaccaccaaagccaaaactcctttggctttaggtttgtttgtcaacaccaacacaacaaacaaagacaatatataaac |
272 |
Q |
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| T |
1780558 |
ggtaggtagggcccacagtccacaccaccaaagccaaaactcctttggctttaggtttgtttgtcaacaccaacacaaccaacaaagacaatatataaac |
1780657 |
T |
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| Q |
273 |
cc |
274 |
Q |
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|| |
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| T |
1780658 |
cc |
1780659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 338 - 380
Target Start/End: Original strand, 1780723 - 1780765
Alignment:
| Q |
338 |
aacacaaactctctctcaatccctttttcttcgcaaccacatc |
380 |
Q |
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| T |
1780723 |
aacacaaactctctctcaatccctttttcttcgcaaccacatc |
1780765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 1780400 - 1780449
Alignment:
| Q |
9 |
ccataaataatgcatattatatacaagattccgggttcaaatctcagttac |
59 |
Q |
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| T |
1780400 |
ccataaataatgcatattatatacaagatt-caagttcaaatctcggttac |
1780449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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