View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921-Insertion-12 (Length: 264)
Name: NF5921-Insertion-12
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921-Insertion-12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 7997467 - 7997713
Alignment:
| Q |
9 |
attattactctacaacacataacaataaacatttccctttttccatttcgtttttaaaacaaagtttctagattattttgatttattaaatctcaaatac |
108 |
Q |
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| T |
7997467 |
attattactctacaacacataacaataaacattttcctttttccatttcgtttttaaaacaaagtttctagattattttgatttattaaatctcaaatat |
7997566 |
T |
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| Q |
109 |
aatttgagtttttcaaaatacagaaaaactaaatgacaagcaatattggtggaagagatttcttatatgtatatatagnnnnnnnnnnnnnnnnnnacgc |
208 |
Q |
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| T |
7997567 |
aatttgagtttttcaaaatacagaaaaactaaatgacaagcaatattggtggaagagatttcttatatgtatatatag---------tttttttttacgc |
7997657 |
T |
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| Q |
209 |
tatatgtggtgcatgacccacacaaacttccataatttggtttgtttggtttatct |
264 |
Q |
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| T |
7997658 |
tatatgtggtgcatgacccacacaaacttccataatttggtttgtttgatttatct |
7997713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 8958397 - 8958490
Alignment:
| Q |
9 |
attattactctacaacacataacaataaacatttccctttttccatttcgtttttaaaacaaagtttctagattattttgatttattaaatctc |
102 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8958397 |
attattactctacaacacataacaataaacattttcctttttccatttcgtttttaaaacaaagtttctagattattttgatttattaaatctc |
8958490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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