View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5921-Insertion-2 (Length: 795)

Name: NF5921-Insertion-2
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5921-Insertion-2
NF5921-Insertion-2
[»] chr2 (9 HSPs)
chr2 (13-518)||(1615407-1615910)
chr2 (590-761)||(1615132-1615302)
chr2 (275-518)||(24455046-24455282)
chr2 (639-761)||(24455839-24455961)
chr2 (13-92)||(24454640-24454720)
chr2 (13-61)||(12741814-12741862)
chr2 (13-61)||(23348927-23348975)
chr2 (592-642)||(24455400-24455449)
chr2 (13-61)||(18355260-18355308)
[»] chr3 (7 HSPs)
chr3 (639-758)||(49233840-49233959)
chr3 (637-761)||(49234408-49234533)
chr3 (13-61)||(31685203-31685251)
chr3 (13-61)||(19882058-19882106)
chr3 (13-61)||(53973233-53973281)
chr3 (426-507)||(48909245-48909326)
chr3 (13-61)||(37982475-37982523)
[»] chr1 (4 HSPs)
chr1 (639-761)||(50862518-50862640)
chr1 (639-692)||(47723984-47724037)
chr1 (639-692)||(47730976-47731029)
chr1 (436-503)||(35361052-35361119)
[»] chr8 (8 HSPs)
chr8 (13-92)||(27541475-27541554)
chr8 (639-730)||(43228075-43228166)
chr8 (408-496)||(43227403-43227489)
chr8 (13-61)||(5657897-5657945)
chr8 (13-61)||(31100819-31100867)
chr8 (13-61)||(14677968-14678016)
chr8 (661-751)||(14839131-14839221)
chr8 (592-635)||(43227620-43227662)
[»] scaffold0035 (1 HSPs)
scaffold0035 (13-61)||(35189-35237)
[»] chr7 (5 HSPs)
chr7 (13-61)||(1262214-1262262)
chr7 (13-61)||(26909928-26909976)
chr7 (13-61)||(48849754-48849802)
chr7 (13-61)||(43071329-43071377)
chr7 (661-751)||(27962469-27962559)
[»] chr6 (2 HSPs)
chr6 (13-61)||(33045378-33045426)
chr6 (30-66)||(10092641-10092677)
[»] chr5 (4 HSPs)
chr5 (13-61)||(22009475-22009523)
chr5 (13-61)||(7473436-7473484)
chr5 (13-61)||(30442494-30442542)
chr5 (13-61)||(9043928-9043976)
[»] scaffold0596 (1 HSPs)
scaffold0596 (13-61)||(780-828)
[»] scaffold0045 (1 HSPs)
scaffold0045 (13-61)||(11581-11629)
[»] chr4 (1 HSPs)
chr4 (13-57)||(29863312-29863356)


Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 13 - 518
Target Start/End: Complemental strand, 1615910 - 1615407
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggtttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615910 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggtttt 1615811  T
Q  113 ttcttgggttttgattcgtctccacttaatccagttgcagcttagcggcttttattctactaattgctctggtctgcaagttctatagttcagaaaaatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1615810 ttcttgggttttgattcgtctccacttaatccagttgcagcttagcggcttttattctactatttgctctggtctgcaagttctatagttcagaaaaatt 1615711  T
Q  213 atttttaaattatatttatgttggttgtttgtattgaattatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccac 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615710 atttttaaattatatttatgttggttgtttgtattgaattatcttgctttttggttcttctaacagtttagttttctattttaaacaaatttaacaccac 1615611  T
Q  313 caacatagcatgaagcagagtatcaaaatcaagtactgtttgatgggaaaaaatcttacttgatgtcacagtcactgtagttgcaggttgcaatcttatg 412  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  1615610 caacatagcatgaagcagagtatcaaaatcaagtattgtttgatgggaaaaaatcttac--gatgtcacagtcactgtggttgcaggttgcaatcttatg 1615513  T
Q  413 ttattttttcccccttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatgaaaatt 512  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1615512 ttattttttcccccttattttatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgatgagaagatgaaaatt 1615413  T
Q  513 ggacag 518  Q
    ||||||    
T  1615412 ggacag 1615407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 590 - 761
Target Start/End: Complemental strand, 1615302 - 1615132
Alignment:
Q  590 ggtaggcaaattcaacattgtgaagctttgaaagaagaatgactatatatgcatagtttggagagagatcgaggtgattttctgcataatttagagctgg 689  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615302 ggtaggcaaattcaacattgtgaagctt-gaaagaagaatgactatatatgcatagtttggagagagatcgaggtgattttctgcataatttagagctgg 1615204  T
Q  690 ttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttt 761  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1615203 ttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtagtggcattttt 1615132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 275 - 518
Target Start/End: Original strand, 24455046 - 24455282
Alignment:
Q  275 acagtttagttttctattttaaacaaatttaacaccaccaacatagcatgaagca-gagtatcaaaatcaagtactgtttgatgggaaaaaatcttactt 373  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||     
T  24455046 acagtttagttttctattttaaacaaatttaacaccaccaacataggatgaagcaggagtatcaaaatcaagttttgtttgatgggaaaaaatcttact- 24455144  T
Q  374 gatgtcacagtcactgtagttgcaggttgcaatcttatg--ttattttttcccccttattgtatggatggtggtgtggctaggtttg-aattcatacgct 470  Q
              | ||||| |||||||||||||||||||||  || |||||||  || |||| ||||||||||||||||||||| |||| ||||||||||||    
T  24455145 ----------ttactgtggttgcaggttgcaatcttatgtttttttttttcttccgtattttatggatggtggtgtggctagatttgaaattcatacgct 24455234  T
Q  471 gaagatgatgaagagtgatgctttgacgagaagatgaaaattggacag 518  Q
    |||||||||||||||||||||||| | |||||||||||| ||||||||    
T  24455235 gaagatgatgaagagtgatgcttttatgagaagatgaaatttggacag 24455282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 639 - 761
Target Start/End: Original strand, 24455839 - 24455961
Alignment:
Q  639 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 738  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||| ||||||||||||||||||||    
T  24455839 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtaatgcaacagcagtgttttggtattgc 24455938  T
Q  739 agctgctatgtagtggcattttt 761  Q
    |||||||| ||||||| ||||||    
T  24455939 agctgctacgtagtggtattttt 24455961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 24454640 - 24454720
Alignment:
Q  13 ctttgatctaatttgagt-caaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaa 92  Q
    |||||||||||| ||| | |||||||||||||||||||| | |||||||| |||| |||||| ||||||||||||||||||    
T  24454640 ctttgatctaatctgacttcaaactttcaaatttgatgtctttttcctatgcaccgaattcccatatagcttatagtgtaa 24454720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 12741814 - 12741862
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  12741814 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 12741862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 23348975 - 23348927
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  23348975 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 23348927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 642
Target Start/End: Original strand, 24455400 - 24455449
Alignment:
Q  592 taggcaaattcaacattgtgaagctttgaaagaagaatgactatatatgca 642  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  24455400 taggcaaattcaatattgtgaagctt-gaaagaagaatgactatatatgca 24455449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 18355308 - 18355260
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  18355308 ctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctat 18355260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 7e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 639 - 758
Target Start/End: Complemental strand, 49233959 - 49233840
Alignment:
Q  639 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 738  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| | |    
T  49233959 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctggttttcggcatgtggactaatgtagtgcagcagcagtgttttggtactac 49233860  T
Q  739 agctgctatgtagtggcatt 758  Q
    ||||||||  ||||||||||    
T  49233859 agctgctacatagtggcatt 49233840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 637 - 761
Target Start/End: Complemental strand, 49234533 - 49234408
Alignment:
Q  637 tatgcatagtttggagagagatcgaggtgattttct-gcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtat 735  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||     
T  49234533 tatgcataatttggagcgagatcgaggtgattttcttgcataatttagagctggttttctgcatgtgggctaatgtaatgcagcagcagtgttttggtac 49234434  T
Q  736 tgcagctgctatgtagtggcattttt 761  Q
    |||||||||||  |||||||||||||    
T  49234433 tgcagctgctacatagtggcattttt 49234408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 31685203 - 31685251
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31685203 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 31685251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 19882106 - 19882058
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  19882106 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 19882058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 53973281 - 53973233
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  53973281 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 53973233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 426 - 507
Target Start/End: Complemental strand, 48909326 - 48909245
Alignment:
Q  426 cttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaagatga 507  Q
    |||||| ||||||||||||| | |||||| |||| |||| | | ||||||||||| ||||||| ||||||| ||||||||||    
T  48909326 cttattttatggatggtggtcttgctaggcttgagttcaaatgttgaagatgatggagagtgaggctttgatgagaagatga 48909245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 37982475 - 37982523
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  37982475 ctttaatctaatctgagtcaaattttcaaatttgatgtatatttcctat 37982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 639 - 761
Target Start/End: Original strand, 50862518 - 50862640
Alignment:
Q  639 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgc 738  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||| | ||||| || ||||||| |||    
T  50862518 tgcataatttggagcgagatcgaggtgattttctgcataatttagagctgattttcggcatgtggactaatgtagtgtatcagcactgctttggtactgc 50862617  T
Q  739 agctgctatgtagtggcattttt 761  Q
    ||||| ||  ||||||| |||||    
T  50862618 agctggtacatagtggcgttttt 50862640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 639 - 692
Target Start/End: Original strand, 47723984 - 47724037
Alignment:
Q  639 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttt 692  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  47723984 tgcataatttggagcgagatcgaggtgattttctgcatcatttagagctggttt 47724037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 639 - 692
Target Start/End: Original strand, 47730976 - 47731029
Alignment:
Q  639 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttt 692  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  47730976 tgcataatttggagcgagatcgaggtgattttctgcatcatttagagctggttt 47731029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 436 - 503
Target Start/End: Complemental strand, 35361119 - 35361052
Alignment:
Q  436 ggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttgacgagaag 503  Q
    ||||||||||||||||   ||||| |||||| | |||||||||||||||||||  |||||| ||||||    
T  35361119 ggatggtggtgtggctctatttgagttcataggttgaagatgatgaagagtgagactttgatgagaag 35361052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 27541554 - 27541475
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaa 92  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  27541554 ctttgatctaatctgaatcaaactttcaaatttgatgtatatttcctatgcaccaaattcccatatagcttatagtgtaa 27541475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 639 - 730
Target Start/End: Original strand, 43228075 - 43228166
Alignment:
Q  639 tgcatagtttggagagagatcgaggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgtttt 730  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||||||||||||||||    
T  43228075 tgcataatttggagtgagatcggggtgattttctgcataatttagagttggctttcggcatgtggactaatgtagtgcagcagcagtgtttt 43228166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 408 - 496
Target Start/End: Original strand, 43227403 - 43227489
Alignment:
Q  408 ttatgttattttttcccccttattgtatggatggtggtgtggctaggtttgaattcatacgctgaagatgatgaagagtgatgctttga 496  Q
    |||||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
T  43227403 ttatgttatttttttcc--ttattttatggatggtggtgtggctaggtttgaattcatacgttgaagatgacaaagagtgatgctttga 43227489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 5657897 - 5657945
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5657897 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 5657945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 31100867 - 31100819
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31100867 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 31100819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 14678016 - 14677968
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||    
T  14678016 ctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctat 14677968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 751
Target Start/End: Original strand, 14839131 - 14839221
Alignment:
Q  661 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtag 751  Q
    |||| ||||||  |||| ||||||||||||||||  ||| |||||||||||| |||||| || ||||||||||| |||| |||||| ||||    
T  14839131 aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtag 14839221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 592 - 635
Target Start/End: Original strand, 43227620 - 43227662
Alignment:
Q  592 taggcaaattcaacattgtgaagctttgaaagaagaatgactat 635  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  43227620 taggcaaattcaacattgtgaagc-ttgaaagaagaatgactat 43227662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 35189 - 35237
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35189 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 35237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 1262214 - 1262262
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1262214 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 1262262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 26909976 - 26909928
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26909976 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 26909928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 48849802 - 48849754
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48849802 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 48849754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 43071377 - 43071329
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  43071377 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 43071329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 661 - 751
Target Start/End: Complemental strand, 27962559 - 27962469
Alignment:
Q  661 aggtgattttctgcataatttagagctggttttctacatgtggactaatgtagtgcagcagcagtgttttggtattgcagctgctatgtag 751  Q
    |||| ||||||  |||| ||||||||||||||||  ||| |||||||||||| |||||| || ||||||||||| |||| |||||| ||||    
T  27962559 aggtaattttcgacatagtttagagctggttttcagcatatggactaatgtaatgcagccgcggtgttttggtactgcacctgctacgtag 27962469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 33045426 - 33045378
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33045426 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 33045378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 10092641 - 10092677
Alignment:
Q  30 tcaaactttcaaatttgatgtatatttcctatacacc 66  Q
    |||||||||||||||||||||||||||||||| ||||    
T  10092641 tcaaactttcaaatttgatgtatatttcctatgcacc 10092677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22009523 - 22009475
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  22009523 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat 22009475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 7473484 - 7473436
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  7473484 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 7473436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 30442542 - 30442494
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  30442542 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 30442494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 9043928 - 9043976
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  9043928 ctttgatctaatctgagtcaaatttttaaatttgatgtatatttcctat 9043976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 780 - 828
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  780 ctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat 828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 11629 - 11581
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat 61  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  11629 ctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctat 11581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 29863356 - 29863312
Alignment:
Q  13 ctttgatctaatttgagtcaaactttcaaatttgatgtatatttc 57  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  29863356 ctttgatctaatctgagtcaaactttcaaatttgatgtatatttc 29863312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University