View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5921-Insertion-3 (Length: 650)
Name: NF5921-Insertion-3
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921-Insertion-3 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
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| [»] scaffold0394 (1 HSPs) |
| |
|
| [»] chr2 (7 HSPs) |
| |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (5 HSPs) |
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| [»] chr4 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 27 - 650
Target Start/End: Complemental strand, 17831958 - 17831343
Alignment:
| Q |
27 |
tatactcaccgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtag-tgctaaatgatatatg |
125 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17831958 |
tatactcactgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtagctgctaaatgatatatg |
17831859 |
T |
|
| Q |
126 |
ctttttattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
17831858 |
ctttttattatactaattgaattagatattgtgatttacgcataggttcctgtttattcaaatgaatggttggaatgaacatttggaacacaatacacaa |
17831759 |
T |
|
| Q |
226 |
gaagaagaagatgatgatatatttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggacta |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
17831758 |
gaagaagaagatgatgatatatttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaaaatttatgcaaagagccatgtagaacta |
17831659 |
T |
|
| Q |
326 |
gtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaac |
425 |
Q |
| |
|
||||||||| |||||||| ||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||| |||| |
|
|
| T |
17831658 |
gtgagctcacaggtcatgtatgggttcaagaaatattataagggaatcccactcgttgttatgagatgtttagaatgaaaaaacatatttttaat-aaac |
17831560 |
T |
|
| Q |
426 |
tttgcaaatgaaattggtggaacatgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacg |
525 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
17831559 |
tttgc-aatg-aattggtggaacatgatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccaca |
17831467 |
T |
|
| Q |
526 |
gtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcct |
624 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
17831466 |
atgtcggtaatagaatgattcaagaaagatttcaacatt-agggtgagactgtaagtagacatttacatcgtgtacttcatgcatgccttaagttgtcct |
17831368 |
T |
|
| Q |
625 |
ttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
| ||||| |||||||||||||||||| |
|
|
| T |
17831367 |
tcaaata-tattaaacccgaagatcc |
17831343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 151 - 650
Target Start/End: Original strand, 16546468 - 16546957
Alignment:
| Q |
151 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgatatatttc |
250 |
Q |
| |
|
||||||| |||||| ||||||||| |||||| ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16546468 |
atattgtcatttacacacaggttcac-tttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagatgatgatacatttg |
16546566 |
T |
|
| Q |
251 |
aagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagt |
350 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| || |
|
|
| T |
16546567 |
aagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgcatgggt |
16546666 |
T |
|
| Q |
351 |
tcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaacat |
450 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| |||||||||||||| |
|
|
| T |
16546667 |
tcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcat-aaactttgc-catg-aattggtggaacat |
16546763 |
T |
|
| Q |
451 |
gatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaaga |
549 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
16546764 |
gatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccacggtgtcggtaatagaatgattcaaga |
16546858 |
T |
|
| Q |
550 |
aagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatc |
649 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
16546859 |
aagatttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaata-tattaaacccgaagatc |
16546956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0394 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: scaffold0394
Description:
Target: scaffold0394; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 32 - 650
Target Start/End: Complemental strand, 9927 - 9316
Alignment:
| Q |
32 |
tcaccgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtag-tgctaaatgatatatgctttt |
130 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| |
|
|
| T |
9927 |
tcactgctatactactgctatcagatacaattacttgctttacttcaaattggatggtatgtttatacacctctttagctgataaatgatatatgctttt |
9828 |
T |
|
| Q |
131 |
tattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaaga |
230 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
9827 |
tatgatactaattgaattagatattttgatttacgcacaggttcatgtttattaaaatgaatggttggaatgaacatttggaacacaatacacaagaaga |
9728 |
T |
|
| Q |
231 |
agaagatgatgatatatttcaagaatcctattttttgg-ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtga |
329 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
9727 |
agaagattatgatatatttcaagaatcctattttttggtctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagaactagtga |
9628 |
T |
|
| Q |
330 |
gctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttg |
429 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |
|
|
| T |
9627 |
gctcacaggtcatgcatgggtttaagaaatattgcaagggaatcccactcgttgttatgagatgttttgaatggaaaaacatatttttaat-aaactttg |
9529 |
T |
|
| Q |
430 |
caaatgaaattggtggaacatgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgt |
529 |
Q |
| |
|
| |||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
9528 |
c-aatg-aattggtggaacatgatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccacagtgt |
9436 |
T |
|
| Q |
530 |
cgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaa |
628 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |
|
|
| T |
9435 |
cggtaatagaatgattcaagaaagatttcaacatt-tgggtgagactgtaagtagacatttccatcgtgtacttcatgcatgccttaagttgtccttcaa |
9337 |
T |
|
| Q |
629 |
atattattaaacccgaagatcc |
650 |
Q |
| |
|
||| |||||||||| ||||||| |
|
|
| T |
9336 |
ata-tattaaacccaaagatcc |
9316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 202 - 650
Target Start/End: Complemental strand, 5917966 - 5917527
Alignment:
| Q |
202 |
gaacatttgaaacacaatacacaagaagaagaagatgatgatatatttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttt |
301 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
5917966 |
gaacaattggaacacaatacacaagaagaagaagatgatgatacatttgaagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatt |
5917867 |
T |
|
| Q |
302 |
tatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaat |
401 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5917866 |
tatgcaaagagccatgtagaactagtgagctcacaggtcatgcatgggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaat |
5917767 |
T |
|
| Q |
402 |
ggaaaaatatatttttaataaaactttgcaaatgaaattggtggaacatgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatg |
501 |
Q |
| |
|
||||||| |||||||| || ||||||||| ||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
5917766 |
ggaaaaacatatttttcat-aaactttgc-catg-aattggtggaacatgatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg |
5917673 |
T |
|
| Q |
502 |
ttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtac |
600 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5917672 |
-tttttggtcgttgt-aggccacggtgtcggtaatagaatgattcaagaaagatttcaacattc-gggtgagactgtaagtagacattttcatcgtgtac |
5917576 |
T |
|
| Q |
601 |
ttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||||||||||||| |
|
|
| T |
5917575 |
ttcatgcatgccttaagttgtccttcaaata-tattaaacccgaagatcc |
5917527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 151 - 650
Target Start/End: Original strand, 36310606 - 36311098
Alignment:
| Q |
151 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaaga---agaagaagatgatgatatat |
247 |
Q |
| |
|
||||||| |||||| ||||||| || |||||| ||||||||| ||| || ||||| ||| |||||||||||||||| ||||||||||||||||| || |
|
|
| T |
36310606 |
atattgtcatttacacacaggt-ccactttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagaagatgatgatacat |
36310704 |
T |
|
| Q |
248 |
ttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatg |
347 |
Q |
| |
|
|| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
36310705 |
ttgaagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgcatg |
36310804 |
T |
|
| Q |
348 |
agttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaa |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||||| |
|
|
| T |
36310805 |
ggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcat-aaactttgc-catg-aattggtggaa |
36310901 |
T |
|
| Q |
448 |
catgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattca |
546 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
36310902 |
catgatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccacggtgtcggtaatagaatgattca |
36310996 |
T |
|
| Q |
547 |
agaaagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaag |
646 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
36310997 |
agaaagatttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaata-tattaaacccgaag |
36311094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 269 - 408
Target Start/End: Original strand, 13895144 - 13895283
Alignment:
| Q |
269 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
368 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||||||||||| || ||||| ||||||||||| | |||||| | || |||||||||||||||||||| |
|
|
| T |
13895144 |
ctgcactagttggtgagtatgcaataaaccatttatgcaaagaaccttgtagaactagtgagctaacgggtcattcttgggttcaagaaatattgcaagg |
13895243 |
T |
|
| Q |
369 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13895244 |
taatcccactcgttgttatgagatgtttcgaatggaaaaa |
13895283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 269 - 408
Target Start/End: Original strand, 14035771 - 14035910
Alignment:
| Q |
269 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
368 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||||||||||| || ||||| ||||||||||| | ||||||| | || |||||||||||||||||||| |
|
|
| T |
14035771 |
ctgcactagttggtgagtatgcaataaaccatttatgcaaagaaccttgtagaactagtgagctaacaggtcattcttgggttcaagaaatattgcaagg |
14035870 |
T |
|
| Q |
369 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14035871 |
taatccaactcgttgttatgagatgtttcgaatggaaaaa |
14035910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 266 - 423
Target Start/End: Complemental strand, 23361919 - 23361762
Alignment:
| Q |
266 |
tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgca |
365 |
Q |
| |
|
|||||||| || | ||||||||||| |||| |||||| |||||||||||||| ||||||||||| | || ||||||||||| ||||| ||||||| |
|
|
| T |
23361919 |
tggctgcactaatgggtgagtatgctgtaaaacatttatgtaaagagccatgtagaactagtgagctaacagagcatgcatgagtgaaagaagtattgca |
23361820 |
T |
|
| Q |
366 |
agggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaa |
423 |
Q |
| |
|
||| |||| ||||||||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
23361819 |
aggaaatcccactcgttgttatgagatgtttcaaatggaaaaacatatttttcataaa |
23361762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 650
Target Start/End: Original strand, 13895351 - 13895516
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| |||||||| || | ||||| ||||||||||||||| |||||||| ||||| ||||||||| || |
|
|
| T |
13895351 |
ttgaagaaatggttgcaatgtttttagtt-gttgtt-ggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgttag |
13895447 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
13895448 |
tagatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaata-tattaaacccgaagatcc |
13895516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 650
Target Start/End: Original strand, 14035978 - 14036143
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| |||||||| || | ||||| ||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
14035978 |
ttgaagaaatggttgcaatgtttttagtt-gttgtt-ggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgtaag |
14036074 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
14036075 |
tagacattttcatcaagtgcttcatgtcgtccttaagttgtctatcaaata-tattaaacccgaagatcc |
14036143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 151 - 650
Target Start/End: Complemental strand, 35570981 - 35570489
Alignment:
| Q |
151 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaaga---tgatgatatat |
247 |
Q |
| |
|
||||||| |||||| ||||||| || |||||| ||||||||| ||| || ||||| ||| ||||||||||||||||||||||||| |||||||| || |
|
|
| T |
35570981 |
atattgtcatttacacacaggt-ccactttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagaagatgatgatacat |
35570883 |
T |
|
| Q |
248 |
ttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatg |
347 |
Q |
| |
|
|| ||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
35570882 |
ttgaagaatcctatattttggctgcactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgcatg |
35570783 |
T |
|
| Q |
348 |
agttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaa |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||||| |
|
|
| T |
35570782 |
ggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcat-aaactttgc-catg-aattggtggaa |
35570686 |
T |
|
| Q |
448 |
catgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattca |
546 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
35570685 |
catgatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccacggtgtcggtaatagaatgattca |
35570591 |
T |
|
| Q |
547 |
agaaagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaag |
646 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
35570590 |
agaaagatttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaata-tattaaacccgaag |
35570493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 4345163 - 4345286
Alignment:
| Q |
300 |
tttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
399 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | ||| |||||||| || ||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
4345163 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttatgagatgtttcga |
4345262 |
T |
|
| Q |
400 |
atggaaaaatatatttttaataaa |
423 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
4345263 |
atggaaaaacatatttttcataaa |
4345286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 482 - 650
Target Start/End: Original strand, 46406839 - 46407004
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| |||||||| || | ||||| ||||||||||||||| |||||||| || | |||||||||| || |
|
|
| T |
46406839 |
ttgaagaaatggttgcaatgtttttagtt-gttgtt-ggccacggggtaggtaatagaatgattcaagaaaggtttcaacactc-gagtgagactgttag |
46406935 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
46406936 |
tagatgttttcatcgagtacttcatgtcgtccttaagttgtctatcaaata-tattaaacccgaagatcc |
46407004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 287; Significance: 1e-160; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 151 - 650
Target Start/End: Original strand, 22480524 - 22481016
Alignment:
| Q |
151 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaaga---agaagaagatgatgatatat |
247 |
Q |
| |
|
||||||| |||||| ||||||| || |||||| ||||||||| ||| || ||||| ||| |||||||||||||||| ||||||||||||||||| || |
|
|
| T |
22480524 |
atattgtcatttacacacaggt-ccactttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaagaagaagaagatgatgatacat |
22480622 |
T |
|
| Q |
248 |
ttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatg |
347 |
Q |
| |
|
|| ||||||||||| |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
22480623 |
ttgaagaatcctatattttggctacactacttggtgagtatgcaacaaaatatttatgcaaagagccatgtagaactagtgagctcacaggtcatgcatg |
22480722 |
T |
|
| Q |
348 |
agttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaa |
447 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||||| |
|
|
| T |
22480723 |
ggttcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcat-aaactttgc-catg-aattggtggaa |
22480819 |
T |
|
| Q |
448 |
catgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattca |
546 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||| |
|
|
| T |
22480820 |
catgatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccacggtgtcggtaatagaatgattca |
22480914 |
T |
|
| Q |
547 |
agaaagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaag |
646 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
22480915 |
agaaagatttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagttgtccttcaaata-tattaaacccgaag |
22481012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 269 - 641
Target Start/End: Original strand, 16840980 - 16841343
Alignment:
| Q |
269 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
368 |
Q |
| |
|
||||| ||||||||||| |||||||||| |||||| |||||||||||||| ||||||| ||||| | ||||||||| ||| |||||||||||||||| |
|
|
| T |
16840980 |
ctgcactacttggtgagcatgcaacaaataatttatgtaaagagccatgtagaactagtgtgctcacaagtcatgcatttgtttaagaaatattgcaagg |
16841079 |
T |
|
| Q |
369 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaacatgatttaaagttctttcta |
468 |
Q |
| |
|
||||| |||| | | |||||||||||||||||| ||||||||||||||| || ||||||| | |||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
16841080 |
gaatctcacttgctattatgagatgtttcgaattgaaaaatatatttttcat-aaactttac-aatg-aatacgtggaacatgatttaaagt--cttcta |
16841174 |
T |
|
| Q |
469 |
aacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggg |
567 |
Q |
| |
|
||||| | |||| |||||||||||||||||||||||||| ||||||| ||| || ||||| | ||||| |||||||||| ||||||||||||| | | |
|
|
| T |
16841175 |
aacatatagggg-ttgaagaaatggttgcaatgtttttt-atcgttgt-aggtcatggtgtaggtaatagaatgattcaataaagatttcaacact-tga |
16841270 |
T |
|
| Q |
568 |
gtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacc |
641 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||| ||| |||||| ||||||| ||||| ||||| ||||||||| |
|
|
| T |
16841271 |
gtgagactgtaagtagtcatttccatagtgtatttcttgcatgtcttaagttatccttcaaata-tattaaacc |
16841343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 269 - 408
Target Start/End: Original strand, 33231601 - 33231740
Alignment:
| Q |
269 |
ctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagg |
368 |
Q |
| |
|
||||| || ||||||||||||||| ||| |||||||||||| || ||||| ||||||||||| | ||||||| | || |||||||||||||||||||| |
|
|
| T |
33231601 |
ctgcactagttggtgagtatgcaataaaccatttatgcaaagaaccttgtagaactagtgagctaacaggtcattcttgggttcaagaaatattgcaagg |
33231700 |
T |
|
| Q |
369 |
gaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33231701 |
taatccgactcgttgttatgagatgtttcgaatggaaaaa |
33231740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 22809174 - 22809297
Alignment:
| Q |
300 |
tttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
399 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | ||| |||||||| || ||||| ||||| |||| |||| ||||||||||||||||||||||||| |
|
|
| T |
22809174 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgtaaggaaatcccactcgttgttatgagatgtttcga |
22809273 |
T |
|
| Q |
400 |
atggaaaaatatatttttaataaa |
423 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
22809274 |
atggaaaaaaatatttttcataaa |
22809297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 650
Target Start/End: Original strand, 33231808 - 33231973
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||||||||||||||||||| | | ||||| |||||||| || | ||||| ||||||||||||||| |||||||| ||||| ||||||||| || |
|
|
| T |
33231808 |
ttgaagaaatggttgcaatgtttttagtt-gttgtt-ggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgttag |
33231904 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||| |||||||||| |||||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
33231905 |
tagatattttcatcgagtacttcatgtcgtccttaagttgtctatcaaata-tattaaacccgaagatcc |
33231973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 151 - 650
Target Start/End: Original strand, 16564554 - 16565044
Alignment:
| Q |
151 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgatatatttc |
250 |
Q |
| |
|
||||||| |||||| ||||||| | | |||||| ||||||||| ||| || ||||| ||| |||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
16564554 |
atattgtcatttacacacaggtccatctttattaaaatgaatgtttggaaggaacaattggaacacaatacacaagaggaagaagatgatgatacatttg |
16564653 |
T |
|
| Q |
251 |
aagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagt |
350 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| | |||||||||| || |
|
|
| T |
16564654 |
aagaatcctatattttcgctgcactacttggtgagtatgcaacaaaatatttatgcaaagcgccatgtagaactagtgagctcacatgtcatgcatgggt |
16564753 |
T |
|
| Q |
351 |
tcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaacat |
450 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| |||||||||||||| |
|
|
| T |
16564754 |
tcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcat-aaactttgc-catg-aattggtggaacat |
16564850 |
T |
|
| Q |
451 |
gatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaaga |
549 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
16564851 |
gatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccacggtgtcggtaatagaatgattcaaga |
16564945 |
T |
|
| Q |
550 |
aagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatc |
649 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
16564946 |
aagatttcaacattc-gggtgagactgtaagtagacatttttatcgtgtacttcatgcatgccttaagttgtccttcaaata-tattaaacccgaagatc |
16565043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 151 - 650
Target Start/End: Original strand, 15617861 - 15618350
Alignment:
| Q |
151 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatg---atgatatat |
247 |
Q |
| |
|
|||||||||||||| ||||||| | | |||||| ||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15617861 |
atattgtgatttacacacaggtccatctttattaaaatgaatggttggaaggaacatttggaacacaatacacaagaagaagaagatgatgatgatatat |
15617960 |
T |
|
| Q |
248 |
ttcaagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatg |
347 |
Q |
| |
|
|| ||||||| ||||||||| ||||| ||| ||||||||||||||||||| |||||||||||||||||||||| || |||||||||| | |||||||||| |
|
|
| T |
15617961 |
ttgaagaatcatattttttgactgcactacatggtgagtatgcaacaaaaattttatgcaaagagccatgtagaaccagtgagctcacatgtcatgcatg |
15618060 |
T |
|
| Q |
348 |
agttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaa |
447 |
Q |
| |
|
|||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||| |||||||| || ||||||||| |||| ||||| ||||| |
|
|
| T |
15618061 |
tgttcaagaaatattgcaagggatttccactcattattatgagatgtttcgaatggaaaaacatatttttcat-aaactttgc-aatg-aattgctggaa |
15618157 |
T |
|
| Q |
448 |
catgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattca |
546 |
Q |
| |
|
||||||||||||| |||||||||| || |||||||||||||||||||| |||||||||||||| |||||| |||||||||| || ||||||||| |
|
|
| T |
15618158 |
catgatttaaagt--cttctaaacatatg-----ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccatggtgtcgatagtagaatgattca |
15618248 |
T |
|
| Q |
547 |
agaaagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaag |
646 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||| |
|
|
| T |
15618249 |
agaaagatttcaacattc-gggtgagactgtaagtacacatttccatcgtgtacttcatgcatgccttgagttatccttcaaata-tattaaacccgaag |
15618346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 22697907 - 22698030
Alignment:
| Q |
300 |
tttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
399 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | ||| |||||||| || ||||| |||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
22697907 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttatgagatgtttcga |
22698006 |
T |
|
| Q |
400 |
atggaaaaatatatttttaataaa |
423 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
22698007 |
atggaaaaacatatttttcataaa |
22698030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 229 - 408
Target Start/End: Complemental strand, 24037194 - 24037015
Alignment:
| Q |
229 |
gaagaagatgatgatatatttcaagaatcctattttt-tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagt |
327 |
Q |
| |
|
|||||||||||||| || || ||| || | ||||||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| | |||||| |
|
|
| T |
24037194 |
gaagaagatgatgacattttccaaaaagc-tatttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaactagt |
24037096 |
T |
|
| Q |
328 |
gagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
||||| | |||||| | || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
24037095 |
gagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaa |
24037015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 482 - 650
Target Start/End: Complemental strand, 24036947 - 24036782
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||||||||||||||||||| | | | ||| |||||||| || | ||||| ||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
24036947 |
ttgaagaaatggttgcaatgtttttagtt-gctgtt-ggccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgtaag |
24036851 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
24036850 |
tagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaata-tattaaacccgaagatcc |
24036782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 151 - 650
Target Start/End: Original strand, 37637719 - 37638208
Alignment:
| Q |
151 |
atattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaatacacaagaagaagaagatgatgatatatttc |
250 |
Q |
| |
|
||||||| |||||| |||| || | | |||||| ||||||||| || || ||||| ||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37637719 |
atattgtcatttacacacaagtccatctttattaaaatgaatgtatggaaggaacaattggaacacaatacacaagaagaagaagatgatgatacatttg |
37637818 |
T |
|
| Q |
251 |
aagaatcctattttttggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagt |
350 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||| |||||||||||| || |
|
|
| T |
37637819 |
aagaatcctatattttgactgcactacttggtgagtatgcaacaaaaattt-atgtaaagagccatgtagaactagtgagctcacaggtcatgcatgggt |
37637917 |
T |
|
| Q |
351 |
tcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaacat |
450 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||||||| || |
|
|
| T |
37637918 |
tcaagaaatattgcaagggaatcccactcgttgttatgagatgtttcgaatggaaaaacatatttttcat-aaactttgc-catg-aattggtggaatat |
37638014 |
T |
|
| Q |
451 |
gatttaaagttctttctaaacatgtgggggtttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaaga |
549 |
Q |
| |
|
|||||||||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
37638015 |
gatttaaagt--cttctaaacatatggggg-ttgaagaaatggttgcaatg-tttttggtcgttgt-aggccacggtgtcggtaatagaatgattcaaga |
37638109 |
T |
|
| Q |
550 |
aagatttcaacattcggggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatc |
649 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| ||||||||||||||||| |
|
|
| T |
37638110 |
aagatttcaacattc-gggtgagactgtaagtagacattttcatcgtgtacttcatgcatgccttaaattgtccttcaaata-tattaaacccgaagatc |
37638207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 10373357 - 10373165
Alignment:
| Q |
27 |
tatactcaccgctatactactgctatcatatacaattacttgctttacttcaaattggatggtatgtttatacacctctgtag-tgctaaatgatatatg |
125 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
10373357 |
tatactcactgctatactactgctatcaaatacaattacttgctttacttcaaattgaatggtatgtttatacacctctgtagctactaaatgatatatg |
10373258 |
T |
|
| Q |
126 |
ctttttattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacatttgaaacacaa |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10373257 |
ctttttattatattaattgaattagatattgtgatttatgcacaggttcctgtttattaaaatgaatggttggaatgaacatttggaacacaa |
10373165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 110 - 650
Target Start/End: Complemental strand, 16247904 - 16247363
Alignment:
| Q |
110 |
tgctaaatgatatatgctttttattatactaattgaattagatattgtgatttacgcacaggttcctgtttatttaaatgaatggttgaaatgaacattt |
209 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||| |||| ||||||| |||| |||||| | |||| |||||||||||||||| ||| |||| |
|
|
| T |
16247904 |
tgctaaatgatagatgctttttgttatactaattgaattagagattgcgatttacacacaagttcctctctattaaaatgaatggttgaaaagaatattt |
16247805 |
T |
|
| Q |
210 |
gaaacacaatacacaagaagaagaagatgatga------tatatttcaagaatcctattttttg------gctgcattacttggtgagtatgcaacaaaa |
297 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||| |||||| |||||||||||||||||| |||| |
|
|
| T |
16247804 |
agaacacaatacacaagaagaagaagaagatgagaatgatatatttgaagaatcctttttttttttttttgctgcactacttggtgagtatgcaaaaaaa |
16247705 |
T |
|
| Q |
298 |
tttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttc |
397 |
Q |
| |
|
|||||||||||||||||| |||||||| | || | ||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
16247704 |
aaaa-atgcaaagagccatgtagaactagtgaacccacatgtcatgcatcagttcaagaagtattgcaagggaatcccactcgttgttataagatgtttc |
16247606 |
T |
|
| Q |
398 |
gaatggaaaaatatatttttaataaaactttgcaaatgaaattggtggaacatgatttaaagttctttctaaacatgtgggggtttgaagaaatggttgc |
497 |
Q |
| |
|
|||| ||||| |||| ||| || ||||||||| |||| ||||||||||||||||||||||| ||||| |||| || |||||| |||||||||| ||||| |
|
|
| T |
16247605 |
aaatgaaaaaacatatatttcat-aaactttgc-aatg-aattggtggaacatgatttaaag-tcttt-taaatatatggggg-ttgaagaaattgttgc |
16247512 |
T |
|
| Q |
498 |
aatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaagtagacattttcatcgt |
596 |
Q |
| |
|
|||| ||||| |||||||||| |||||| ||| | ||||| ||| |||||||||| |||||||||||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
16247511 |
aatg-tttttagtcgttgtaa-gccacgatgtaggtaatagaataattcaagaaatatttcaacattc-gggttagactataagtagacattttcatcg- |
16247416 |
T |
|
| Q |
597 |
gtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| ||||||||| |||||||| |
|
|
| T |
16247415 |
gtacttcatgcatgccttaagttgtccttcaaata-tattaaacctgaagatcc |
16247363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 408
Target Start/End: Complemental strand, 51126368 - 51126184
Alignment:
| Q |
224 |
aagaagaagaagatgatgatatatttcaagaatcctattttt-tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagga |
322 |
Q |
| |
|
|||| |||||||||||||| || || ||| || | ||||||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| | | |
|
|
| T |
51126368 |
aagatgaagaagatgatgacattttccaaaaagc-tatttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaa |
51126270 |
T |
|
| Q |
323 |
ctagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
|||||||||| | |||||| | || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51126269 |
ctagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaa |
51126184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 7010828 - 7010951
Alignment:
| Q |
300 |
tttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcga |
399 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| | ||| |||||||| || ||||| |||||||||| |||| ||||||||||| ||||||||||||| |
|
|
| T |
7010828 |
tttatgtaaagagccatgtagaactagtgagctaacagggcatgcatgggtgaaagaagtattgcaaggaaatcccactcgttgttttgagatgtttcga |
7010927 |
T |
|
| Q |
400 |
atggaaaaatatatttttaataaa |
423 |
Q |
| |
|
||||||||| |||||||| ||||| |
|
|
| T |
7010928 |
atggaaaaacatatttttcataaa |
7010951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 482 - 650
Target Start/End: Complemental strand, 51126116 - 51125951
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||| ||||||||||||||| | | | ||| || |||||| || | ||||| ||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
51126116 |
ttgaagaaacggttgcaatgtttttagtt-gctgttag-ccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgtaag |
51126020 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
51126019 |
tagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaata-tattaaacccgaagatcc |
51125951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 266 - 423
Target Start/End: Original strand, 19647333 - 19647490
Alignment:
| Q |
266 |
tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtaggactagtgagctcaaaggtcatgcatgagttcaagaaatattgca |
365 |
Q |
| |
|
|||||||| || | ||||||||||| || ||| |||||| |||||||||||||| ||||||||||| | ||| |||||||| || ||||| ||||||| |
|
|
| T |
19647333 |
tggctgcactaatgggtgagtatgctacgaaacatttatgtaaagagccatgtagaactagtgagctaatagggcatgcatgggtgaaagaagtattgca |
19647432 |
T |
|
| Q |
366 |
agggaatcacactcgttgttatgagatgtttcgaatggaaaaatatatttttaataaa |
423 |
Q |
| |
|
||| |||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19647433 |
aggaaatcccactcgttgttataagatgtttcgaatggaaaaatatatttttcataaa |
19647490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 408
Target Start/End: Original strand, 192485 - 192669
Alignment:
| Q |
224 |
aagaagaagaagatgatgatatatttcaagaatcctattttt-tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagga |
322 |
Q |
| |
|
|||| |||||||||||||| || || ||| || | ||||||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| | | |
|
|
| T |
192485 |
aagatgaagaagatgatgacattttccaaaaagc-tatttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaa |
192583 |
T |
|
| Q |
323 |
ctagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
|||||||||| | |||||| | || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
192584 |
ctagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaa |
192669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 408
Target Start/End: Original strand, 720089 - 720273
Alignment:
| Q |
224 |
aagaagaagaagatgatgatatatttcaagaatcctattttt-tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagga |
322 |
Q |
| |
|
|||| |||||||||||||| || || ||| || | ||||||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| | | |
|
|
| T |
720089 |
aagatgaagaagatgatgacattttccaaaaagc-tatttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaa |
720187 |
T |
|
| Q |
323 |
ctagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
|||||||||| | |||||| | || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
720188 |
ctagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaa |
720273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 224 - 408
Target Start/End: Original strand, 881196 - 881380
Alignment:
| Q |
224 |
aagaagaagaagatgatgatatatttcaagaatcctattttt-tggctgcattacttggtgagtatgcaacaaaatttttatgcaaagagccatgtagga |
322 |
Q |
| |
|
|||| |||||||||||||| || || ||| || | ||||||| |||||||| || |||||||||||||| ||| |||||||||||| || ||| | | |
|
|
| T |
881196 |
aagatgaagaagatgatgacattttccaaaaagc-tatttttgtggctgcactagttggtgagtatgcagtaaaccatttatgcaaagaaccttgtcgaa |
881294 |
T |
|
| Q |
323 |
ctagtgagctcaaaggtcatgcatgagttcaagaaatattgcaagggaatcacactcgttgttatgagatgtttcgaatggaaaaa |
408 |
Q |
| |
|
|||||||||| | |||||| | || |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
881295 |
ctagtgagctaacgggtcattcctgggttcaagaaatattgcaaggtaatcccactcgttgttatgagatgtttcgaatggaaaaa |
881380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 482 - 650
Target Start/End: Original strand, 192737 - 192902
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||| ||||||||||||||| | | | ||| || |||||| || | ||||| ||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
192737 |
ttgaagaaacggttgcaatgtttttagtt-gctgttag-ccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgtaag |
192833 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
192834 |
tagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaata-tattaaacccgaagatcc |
192902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 482 - 650
Target Start/End: Original strand, 720341 - 720506
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||| ||||||||||||||| | | | ||| || |||||| || | ||||| ||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
720341 |
ttgaagaaacggttgcaatgtttttagtt-gctgttag-ccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgtaag |
720437 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
720438 |
tagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaata-tattaaacccgaagatcc |
720506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 482 - 650
Target Start/End: Original strand, 881448 - 881613
Alignment:
| Q |
482 |
ttgaagaaatggttgcaatgttttttggtcgttgtaaggccacggtgtcgataata-aatgattcaagaaagatttcaacattcggggtgagactgtaag |
580 |
Q |
| |
|
||||||||| ||||||||||||||| | | | ||| || |||||| || | ||||| ||||||||||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
881448 |
ttgaagaaacggttgcaatgtttttagtt-gctgttag-ccacggggtaggtaatagaatgattcaagaaaggtttcaacactcggg-tgagactgtaag |
881544 |
T |
|
| Q |
581 |
tagacattttcatcgtgtacttcatgcatgccttaagtcgtcctttaaatattattaaacccgaagatcc |
650 |
Q |
| |
|
|||||||||||||| || ||||||| |||||||| ||| | ||||| |||||||||||||||||| |
|
|
| T |
881545 |
tagacattttcatcaagtgcttcatgtcgtccttaagttgtctatgaaata-tattaaacccgaagatcc |
881613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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