View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921-Insertion-4 (Length: 650)
Name: NF5921-Insertion-4
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921-Insertion-4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 599; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 9 - 650
Target Start/End: Complemental strand, 2892343 - 2891699
Alignment:
| Q |
9 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892343 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaa |
2892244 |
T |
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| Q |
109 |
ttgatccagtaacacatactcctagacttgacttattggacctctcttctattctatgttcatctctctatg---gtagtagtaactcatcatctcaaat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2892243 |
ttgatccagtaacacatactcctagacttgacttattggacctctcttctattctatgttcatctctctatgctagtagtagtaactcatcatctcaaat |
2892144 |
T |
|
| Q |
206 |
taacaacttccaaaatcaacaacctttgctcaatcctcaccttctaaacttagcttcctcgttcttccaacatcaacaagattataataatcctcaaata |
305 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892143 |
taacaacttccaaaatcaacaacctttgctcaatcctgaccttctaaacttagcttcctcgttcttccaacatcaacaagattataataatcctcaaata |
2892044 |
T |
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| Q |
306 |
cagaaccaagttccactttcacattttgtccaatttcaagaccaacttccacaagtaaattccaatgttagtactaccacattcactaccccttgtgttt |
405 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2892043 |
cagaaccaagttccactttcacattttctccaatttcaagaccaacttccacaagtaaattccaatgttattactaccacattcactaccccttgtgttt |
2891944 |
T |
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| Q |
406 |
cttcattgccgaatgtggatacatatacatcaaatttcaccgaccttagtaattaccaacaatattctgttcatgatattgattgccaccaaaataatgg |
505 |
Q |
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| T |
2891943 |
cttcattgccaaatgtggatacatatacatcaaatttcaccgaccttagtaattaccaacaatattctgttcatgatattgattgccaccaaaataatgg |
2891844 |
T |
|
| Q |
506 |
gtttggtctaagtaccttaaaagaggaggattatatccctcaattatcaaactataataattattatgggtctgataatcaaaatcttatttactatcaa |
605 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
2891843 |
gtttggtctaagtaacttaaaagaggaggattatatccctcaattatcaaactataataattattatggttctgataatcaaaatcttatgtactatcaa |
2891744 |
T |
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| Q |
606 |
acttcaaatcaacttctatcaacaccatcatcttctagtcccaca |
650 |
Q |
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| T |
2891743 |
acttcaaatcaacttctatcaacaccgtcatcttctagtcccaca |
2891699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 37881392 - 37881310
Alignment:
| Q |
9 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaag |
91 |
Q |
| |
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| T |
37881392 |
aggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaag |
37881310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 36246514 - 36246685
Alignment:
| Q |
9 |
aggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaaggcttttgagaatgggaa |
108 |
Q |
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||||||||| ||||||| ||| | |||||||||| || ||||||||||| || || ||||||||||| |||||||||||||| || || |||||||||| |
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| T |
36246514 |
aggtggtcttcaattgcttctaggctaccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaa |
36246613 |
T |
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| Q |
109 |
ttgatccagtaacacatactcctagacttgacttattggacctctcttctattctatgttcatctctctatg |
180 |
Q |
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| T |
36246614 |
ttgatcctgtgacacataatccacgttttgatcttttggacctatcttctatcctaaattcatctctctatg |
36246685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 50777543 - 50777504
Alignment:
| Q |
33 |
ttaccaggaaggacggacaatgaaataaaaaactattgga |
72 |
Q |
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||||||||||| |||||||||||||||||||| ||||||| |
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| T |
50777543 |
ttaccaggaagaacggacaatgaaataaaaaattattgga |
50777504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 53557723 - 53557767
Alignment:
| Q |
33 |
ttaccaggaaggacggacaatgaaataaaaaactattggaacaca |
77 |
Q |
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| T |
53557723 |
ttacctggaagaacagacaatgacataaaaaactattggaacaca |
53557767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 34 - 72
Target Start/End: Original strand, 38707205 - 38707243
Alignment:
| Q |
34 |
taccaggaaggacggacaatgaaataaaaaactattgga |
72 |
Q |
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||||||| || |||||||||||||||||||||||||||| |
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| T |
38707205 |
taccaggtagaacggacaatgaaataaaaaactattgga |
38707243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 9622085 - 9622133
Alignment:
| Q |
31 |
gattaccaggaaggacggacaatgaaataaaaaactattggaacacaca |
79 |
Q |
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||||||||||| | || |||||||||||||| ||||| ||||||||||| |
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| T |
9622085 |
gattaccaggacgaacagacaatgaaataaagaactactggaacacaca |
9622133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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