View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_11 (Length: 568)
Name: NF5921_high_11
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 13 - 412
Target Start/End: Original strand, 33468887 - 33469282
Alignment:
| Q |
13 |
aatatttaagactatagtttattttannnnnnnaggggaagtctatagtttttattggtatcgccattgttatcacccattatcgataattaatcagttt |
112 |
Q |
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| T |
33468887 |
aatatttaagactatagtttattttatttttttaggggaagtctatagtttttattggtatcgccattgttatcacccattatcgataattaatcagttt |
33468986 |
T |
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| Q |
113 |
tagggatggacccagcctgctgaaattttaggtgaaagaataaattggaacatgggttatacacgaatagcccacatggtggtaccaatcctannnnnnn |
212 |
Q |
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| T |
33468987 |
tagggatggacccagccttctgaaattttaggtgaaagaataaattggaacatgggttatacacgaatagcccacatggtggtaccaatcctattttttt |
33469086 |
T |
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| Q |
213 |
gtcaccttttttgcaaatgcaaattataataataatnnnnnnntgtagctgtaaattgaaatataatcgtgtaatcatttagctgagttaaaacgctgct |
312 |
Q |
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| T |
33469087 |
gtcaccttttttgcaaatgcaaattataataataa-aaaaaaatgtagc-------tgaaatataatcgtgtaatcatttagctgagttaaaacgctgct |
33469178 |
T |
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| Q |
313 |
tgtatgatagcctttccttactttcttttcttcctccaattgctcatactcgatt----ataaataaactcaatattcgtgtggtccaatgtccacatgc |
408 |
Q |
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| T |
33469179 |
tgtatgatagcccttcgttactttcttttcttcctccaattgctcatactcgattataaataaataaactcaatattcatgtggtccaatgtccatatgc |
33469278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 472 - 552
Target Start/End: Original strand, 33469342 - 33469423
Alignment:
| Q |
472 |
tactgtatgatagcgaaagtttacagtatttgttttatttaagtgacgtgacattttttc-atactatcccacccaagttag |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
33469342 |
tactgtatgatagcgaaagtttacagtatttgttttatttaagtgatgtgacattttttctatactatcccacccaagttag |
33469423 |
T |
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