View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_14 (Length: 552)
Name: NF5921_high_14
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 110 - 282
Target Start/End: Original strand, 4349627 - 4349799
Alignment:
| Q |
110 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaaca |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349627 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaaca |
4349726 |
T |
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| Q |
210 |
tgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtgg |
282 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4349727 |
tgatggttaaacaccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccacggtgg |
4349799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 271 - 443
Target Start/End: Complemental strand, 4349799 - 4349627
Alignment:
| Q |
271 |
ccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccct |
370 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4349799 |
ccaccgtggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatcattagttttccct |
4349700 |
T |
|
| Q |
371 |
ttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4349699 |
ttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
4349627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 271 - 443
Target Start/End: Original strand, 4359085 - 4359257
Alignment:
| Q |
271 |
ccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359085 |
ccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccct |
4359184 |
T |
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| Q |
371 |
ttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
443 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
4359185 |
ttgatatgccttttcttaacatgaacaaggccacacgtatcatactccatactctcttagtaattattggtac |
4359257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 110 - 282
Target Start/End: Complemental strand, 4359257 - 4359085
Alignment:
| Q |
110 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaaca |
209 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359257 |
gtaccaataattactaagagagtatggagtatgatacgtgtggccttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaaca |
4359158 |
T |
|
| Q |
210 |
tgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtgg |
282 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359157 |
tgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtgg |
4359085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 110 - 282
Target Start/End: Original strand, 4353014 - 4353185
Alignment:
| Q |
110 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaaca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4353014 |
gtaccaataataaccaagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggtatatcaaagggaaaactaatgatggacctcaaca |
4353113 |
T |
|
| Q |
210 |
tgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtgg |
282 |
Q |
| |
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||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353114 |
tgatggtcaaacgccgtag-aagcttgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtgg |
4353185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 271 - 443
Target Start/End: Complemental strand, 4353185 - 4353014
Alignment:
| Q |
271 |
ccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccct |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4353185 |
ccaccatggtggtgatgaaacatgaggttggtgatggcttttccggcaagctt-ctacggcgtttgaccatcatgttgaggtccatcattagttttccct |
4353087 |
T |
|
| Q |
371 |
ttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
443 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353086 |
ttgatataccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattggtac |
4353014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 304 - 428
Target Start/End: Original strand, 43475487 - 43475611
Alignment:
| Q |
304 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagcca |
403 |
Q |
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|
|||||||||||||||||||||| ||||||||| | ||||||||| ||| ||||||||||||| |||||||| || |||||||| |||||||| || |||| |
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| T |
43475487 |
atggcttttccggcgagcttgctgcggcgtttgagcatcatgtttaggcccatcattagtttgccctttgacataccttttctcaacatgaagaaggcca |
43475586 |
T |
|
| Q |
404 |
cacgtatcatactccatactctctt |
428 |
Q |
| |
|
|||||| ||||||||| ||| |||| |
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| T |
43475587 |
cacgtaccatactccacactttctt |
43475611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 43475611 - 43475487
Alignment:
| Q |
125 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaacatgatggttaaacgcc |
224 |
Q |
| |
|
|||| ||| ||||||||| |||||||||| || |||||||| |||||||| || |||||||| ||||||||||||| ||| ||||||||| | ||||||| |
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| T |
43475611 |
aagaaagtgtggagtatggtacgtgtggccttcttcatgttgagaaaaggtatgtcaaagggcaaactaatgatgggcctaaacatgatgctcaaacgcc |
43475512 |
T |
|
| Q |
225 |
gcggcaagctcgccggaaaagccat |
249 |
Q |
| |
|
|| |||||||||||||||||||||| |
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| T |
43475511 |
gcagcaagctcgccggaaaagccat |
43475487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 304 - 428
Target Start/End: Original strand, 43486106 - 43486230
Alignment:
| Q |
304 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagcca |
403 |
Q |
| |
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|||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||| || || | |
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| T |
43486106 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggcta |
43486205 |
T |
|
| Q |
404 |
cacgtatcatactccatactctctt |
428 |
Q |
| |
|
|||||| ||||||||| |||||||| |
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|
| T |
43486206 |
cacgtaccatactccacactctctt |
43486230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 43486230 - 43486106
Alignment:
| Q |
125 |
aagagagtatggagtatgatacgtgtggctttgttcatgttaagaaaaggcatatcaaagggaaaactaatgatggacctcaacatgatggttaaacgcc |
224 |
Q |
| |
|
|||||||| ||||||||| ||||||| || || |||||||| ||||||||||| |||||||||||||| ||||||| ||| ||||||||| | ||||||| |
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|
| T |
43486230 |
aagagagtgtggagtatggtacgtgtagccttcttcatgttgagaaaaggcatttcaaagggaaaactgatgatgggcctaaacatgatgctcaaacgcc |
43486131 |
T |
|
| Q |
225 |
gcggcaagctcgccggaaaagccat |
249 |
Q |
| |
|
|| ||||||| |||||||||||||| |
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|
| T |
43486130 |
gcagcaagcttgccggaaaagccat |
43486106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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