View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_15 (Length: 538)
Name: NF5921_high_15
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 19 - 476
Target Start/End: Complemental strand, 46040288 - 46039826
Alignment:
| Q |
19 |
aaatgctggtcttggattcttggtattaatttaatcatggtattgttgtactatccttgtaatttta-----ggattaaattagaattttataagggtgg |
113 |
Q |
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| T |
46040288 |
aaatgctagtcttggattcttggtattaatttaatcatggtattgttgtactatccttgtaattttattttaggattaaattagaattttataagggtgg |
46040189 |
T |
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| Q |
114 |
tgaattgatgattaacgttggttattgtaacttgcattattttagtttggaatggatgccaagtttaaaaattgcacggatcaagattttcttgtccaaa |
213 |
Q |
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| T |
46040188 |
tgaattgatgattaacgttggttattgtaacttgcattattttagtttggaatggatgccaagtttaaaaattgcacggatcaagattttcttgtccaaa |
46040089 |
T |
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| Q |
214 |
aagagagtatcgtgtccaatgtttaggaaaattgctctttaaacaccttaaattgatcacaagcacgtcaaaatgttaataatatcactattggatccta |
313 |
Q |
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| T |
46040088 |
aagagagtatcgtgtccaatgtttaggaaaattgctctttaaacaccttaaattgctcacaagcacgtcaaaatgttaataatatcactattggatccta |
46039989 |
T |
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| Q |
314 |
atttccgttcgcatgtgatcaagagttagaatccaatatgctctaaactacatttactccctgaatctctaattggtatgttagggtgatggagaagtgt |
413 |
Q |
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| T |
46039988 |
atttccgttcacatgtgatcaagagttagaatctaatatgctctaaactacatttactccctgaatctctaattggtatgttggggtgatggagaagtgt |
46039889 |
T |
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| Q |
414 |
agttcaagtgagcggagctatttataagtaaaagtacataaatttcgatcacaagtgaacgag |
476 |
Q |
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| T |
46039888 |
aatacaagtgagcggagctatttataagtaaaagtacataaatttcaatcacaagtgaacgag |
46039826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 3562018 - 3561982
Alignment:
| Q |
485 |
gtgtgcaacattttttatcagtagagtttggttttca |
521 |
Q |
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| T |
3562018 |
gtgtgcaacattttttatcagtagagtttggttttca |
3561982 |
T |
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