View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_21 (Length: 470)
Name: NF5921_high_21
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_21 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0370 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 22781848 - 22782305
Alignment:
| Q |
18 |
atgttgcaccatcagtacacgcactagcctccctnnnnnnnn-cacgcactatccactacaagactcctcacatgcatggttatctaccatgttcttagc |
116 |
Q |
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| T |
22781848 |
atgttgcaccatcagcacacgcactaccctccctaaaaaaaaacacgcactatccactacaagactcctcacatgcatggttatctaccatgttcttagc |
22781947 |
T |
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| Q |
117 |
accactaaccactttgaagagtgagggagaagacacactctctggtggagatatgcatcaaggaccttgtcaatggacacgctctctggtggagatatgc |
216 |
Q |
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| T |
22781948 |
accactaaccactttgaagagtgagggagaagacacactctctggtggagatatgcatcaaggaccttgtcaatggacacgctctctggtggagatatgc |
22782047 |
T |
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| Q |
217 |
accaaagaccttgtcaatggatcatgtcaaggagaggagattgaagcagaacatcgggcgccacaatcccactaggatgggagttatcatggactacttg |
316 |
Q |
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| T |
22782048 |
accaaagaccttgtcaatagatcatgtcaaggagaggagattgaagcagaacatcgggcgccacaatctcactaggatgggagttatcatgcactacttg |
22782147 |
T |
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| Q |
317 |
cgaaactagtcaaatgaatgattaagcattgcagatcacgtcgtttgcctagtacgcaatagttacatggta----aatactttttcatgcattgtaact |
412 |
Q |
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| T |
22782148 |
tgaaactagtcgaatgaaggattaagcattgtagatcatgtcgtttagctagtacgcaatagttacaccgtacgtcaatactttttcatgcattgtaact |
22782247 |
T |
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| Q |
413 |
aacacatatgctttatttaacaatctatgactggtttaaatatagagaatacaagtat |
470 |
Q |
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| T |
22782248 |
aacacatatgttttatttaacaatctatgactggtttaaatatagagaatacaagtat |
22782305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 9089 - 9028
Alignment:
| Q |
246 |
aggagaggagattgaagcagaacatcgggcgccacaatcccactaggatgggagttatcatg |
307 |
Q |
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| T |
9089 |
aggagaggagattgaagccgaacatagggcgccacgatcccactaacatgggagttatcatg |
9028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 14379 - 14318
Alignment:
| Q |
246 |
aggagaggagattgaagcagaacatcgggcgccacaatcccactaggatgggagttatcatg |
307 |
Q |
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| T |
14379 |
aggagaggagattgaagccgaacatagggcgccacgatcccactaacatgggagttatcatg |
14318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 17418456 - 17418513
Alignment:
| Q |
109 |
ttcttagcaccactaaccactttgaagagtgagggagaagacacactctctggtggag |
166 |
Q |
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| T |
17418456 |
ttcttagcaccactaaccactttgaaaagtgatggagaagtcacaatcttttgtggag |
17418513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 3412674 - 3412727
Alignment:
| Q |
112 |
ttagcaccactaaccactttgaagagtgagggagaagacacactctctggtgga |
165 |
Q |
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| T |
3412674 |
ttagcaccactaactactttgaggagtgagatagaagacacgatctctggtgga |
3412727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 8821922 - 8821847
Alignment:
| Q |
228 |
tgtcaatggatcatgtcaaggagaggagattgaagcagaacatcgggcgccacaatcccactaggatgggagttat |
303 |
Q |
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| T |
8821922 |
tgtcaatagatcatgtctaggagaggaaactgaagccgaatgtggggcgccacgatcccactaccatgggagttat |
8821847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 2883066 - 2883147
Alignment:
| Q |
224 |
accttgtcaatggatcatgtcaaggagaggagattgaagcagaacatcgggcgccacaatcccactaggatgggagttatca |
305 |
Q |
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| T |
2883066 |
accttgtcaacggatcatgtcgatgagaggagattaaagccgaacataggacaccatgatcccactaccatgagagttatca |
2883147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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