View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_22 (Length: 468)
Name: NF5921_high_22
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 438; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 49105129 - 49105593
Alignment:
| Q |
1 |
ttgagcataaaggagaaaatataagaggccaaaatcgttcagaaaatagtacaggccaaaatcacacaattgtgacattggatcaaatatgcaattaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49105129 |
ttgagcataaaggagaaaatataagaggccaaaatcgttcagaaaatagtacaggccaaaatcacacaattgtgacattggatcaaatatgcaattaagc |
49105228 |
T |
|
| Q |
101 |
aatcatgtatgcacctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatcaacaacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49105229 |
tatcatgtatgcacctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatcaacaacaa |
49105328 |
T |
|
| Q |
201 |
t--ccgatgaggcttgcagtccactacagctgctactcctatcacacttcctataatcaacaacactattactacagctgcagacctcggcagcattatt |
298 |
Q |
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|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49105329 |
ataccgatgaggcttgcagtcgactacagctgctactcctatcacacttcctataatcaacaacactattactacagctgcagacctcggcagcattatt |
49105428 |
T |
|
| Q |
299 |
cgatctccgctcagaaagaaactaaaacaagcacggttgttctattactgtcttgaaccagtgtacttaatttgacatttagatgatgtgattaacaaca |
398 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49105429 |
cgatctccgctcagaaagaaactaaaacaagcacggttgttctattactgtcttgaaccagtgtacttaatttgacatttagatgatgtgattaacaaca |
49105528 |
T |
|
| Q |
399 |
ataaaacgctatttatttacaactagctaacactattatttattatagcttaatttgatgatgtc |
463 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
49105529 |
ataaaacgctatttatttacaactagctaacactattatttattatagcttaatttgatgctgtc |
49105593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 18134607 - 18134721
Alignment:
| Q |
113 |
acctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatcaacaacaatccgatgaggct |
212 |
Q |
| |
|
||||| |||||||| | |||||| |||||||| ||||| || || |||||||||||||| || ||| ||||||| ||||| |||||||| || ||||||| |
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| T |
18134607 |
acctccaattgaaattgtgaagtgttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggct |
18134706 |
T |
|
| Q |
213 |
tgcagtccactacag |
227 |
Q |
| |
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| | |||||||||| |
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| T |
18134707 |
ttccctccactacag |
18134721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 49121816 - 49121930
Alignment:
| Q |
113 |
acctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatcaacaacaatccgatgaggct |
212 |
Q |
| |
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||||| |||||||| | |||||| |||||||| ||||| || || |||||||||||||| || ||| ||||||| ||||| |||||||| || ||||||| |
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| T |
49121816 |
acctccaattgaaattgtgaagtgttgagcttaagaagataaagcagagcaaataaatcatcagtatcaacatcagtatccacaacaattcgttgaggct |
49121915 |
T |
|
| Q |
213 |
tgcagtccactacag |
227 |
Q |
| |
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| | |||||||||| |
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|
| T |
49121916 |
ttccctccactacag |
49121930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 6954131 - 6954031
Alignment:
| Q |
113 |
acctctaattgaaactctgaagtattgagcttgagaaggtagagtagagcaaataaatcgtcggtagcaacatctgtatcaacaacaatccgatgaggct |
212 |
Q |
| |
|
||||||||| |||||||||| |||||||||| | ||| || || || ||||||||||| || ||| ||||||||||||| | || ||||| ||||||| |
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|
| T |
6954131 |
acctctaatagaaactctgatctattgagcttcaaaagatatagaagtgcaaataaatcatcagtatcaacatctgtatccaaaagaatcctttgaggct |
6954032 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
|
| |
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|
| T |
6954031 |
t |
6954031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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