View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5921_high_25 (Length: 460)
Name: NF5921_high_25
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_25 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 21 - 418
Target Start/End: Complemental strand, 3328865 - 3328468
Alignment:
| Q |
21 |
tttcacttccaaaaccttaacctcttcaacctcattacacaaaattaacaaactaattatcctattatgtataatccagctacgcgtgttacaaaagaac |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3328865 |
tttcacttccaaaaccttaacctcttcaacctcattacacaaaattaacaaactaattatcctattatgtataatccagctacgcgtgttacaaaagaac |
3328766 |
T |
|
| Q |
121 |
ccaatgcggttcttgaattaggttcacgaattggtcgattcacactcgatacgtcgtcgtttcttaacctaacttcagaagcatgttcaccagcttcact |
220 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3328765 |
caaatgcggttcttgaattaggttcacgaattggtcgattcacactcgatacgtcgtcgtttctaaacctaacttcagaagcatgttcaccagcttcact |
3328666 |
T |
|
| Q |
221 |
tctttctaattatctttacttcaacaacctcacacgtgtggcatcatcatcaaaacgcaccgtttcgctcagtttaaacaatagcggtggtggttataag |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3328665 |
tctttctaattatctttacttcaacaacctcacacgtgtggcatcatcatcaaaacgcaccgtttcactcagtttaaacaatagcggtggtggttataag |
3328566 |
T |
|
| Q |
321 |
tttaggaatattcttcatgattttaatagagctgttagggttcattgtgagaggatgccgattggattcgcttcgttgagagtaggtgatggaggtga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3328565 |
tttaggaatattcttcatgattttaatagagctgttagggttcattgtgagaggatgccgattggattcgcttcgttgagagtaggtgatggaggtga |
3328468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 69 - 418
Target Start/End: Complemental strand, 10027291 - 10026942
Alignment:
| Q |
69 |
caaactaattatcctattatgtataatccagctacgcgtgttacaaaagaacccaatgcggttcttgaattaggttcacgaattggtcgattcacactcg |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10027291 |
caaactaattatcctattatgtataatccagctacgcgtgttacaaaagaacccaatgcggttcttgaattaggttcacgaattggtcgattcacactcg |
10027192 |
T |
|
| Q |
169 |
atacgtcgtcgtttcttaacctaacttcagaagcatgttcaccagcttcacttctttctaattatctttacttcaacaacctcacacgtgtggcatcatc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10027191 |
atacgtcgtcgtttcttaacctaacttcagaagcatgttcaccagcttcacttctttctaattatctttccttcaacaacctcacacgtgtggcatcatc |
10027092 |
T |
|
| Q |
269 |
atcaaaacgcaccgtttcgctcagtttaaacaatagcggtggtggttataagtttaggaatattcttcatgattttaatagagctgttagggttcattgt |
368 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10027091 |
atcaaaacgcaccgtttcactcagtttaaacaatagcggtggtggttataagtttaggaatattcttcatgattttaatagagctgttagggttcattgt |
10026992 |
T |
|
| Q |
369 |
gagaggatgccgattggattcgcttcgttgagagtaggtgatggaggtga |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10026991 |
gagaggatgccgattggattcgcttcgttgagagtaggtgatggaggtga |
10026942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University