View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5921_high_27 (Length: 452)
Name: NF5921_high_27
Description: NF5921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5921_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Complemental strand, 38039989 - 38039548
Alignment:
| Q |
1 |
cataaaatagttaaggattacaaacacaaacaccgttatcattacatcataaaaattgaaattggccctgtcaagataaagtatgaaggttgatgaggtt |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38039989 |
cataaaatagttaaggattacacacacaaacaccgttatcattacatcataaaaattgaaattggccctgtcaagataaagtatgaaggttgatgaggtt |
38039890 |
T |
|
| Q |
101 |
agcgttgaagaaacccagcaaagttgctttttgaagcaaaaccattaataaagagaatataagattgctttagattaacatggggtactaaacatcgtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38039889 |
agcgttgaagaaacccagcaaagttgctttttgaagcaaagccattaataaagagaatataagattgctttagattaacatggggtactaaacatcgtcc |
38039790 |
T |
|
| Q |
201 |
tgctttattctttttcccttgcttctttgaaatcctcatcatgtgtcttggtggtgatgttagattctcttcacacaattcaggttcttcaatgatagta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38039789 |
tgctttattctttttcccttgcttctttgaaatcctcatcatgtgtcttggtggtgatgttagattctcttcacacaattcaggttcttcaatgatagta |
38039690 |
T |
|
| Q |
301 |
gaaagcttagaccttagaatttcctccatgtccttcctagactcatttctcctgctagtgcaaggcactgaccttaatattttcctgcatgccctcctca |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38039689 |
gaaagcttagcccttagaatttcctccatgtccttcctagactcatttctcctgctcgtgcaaggcactgaccttaatattttcctgcatgccctcctca |
38039590 |
T |
|
| Q |
401 |
tttcttttgcttctgatttcaatctttacatttgcacctatg |
442 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
38039589 |
tttcttttgcttctgatttcaatctttacatttgcacctatg |
38039548 |
T |
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